PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35310_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 349aa    MW: 38869.9 Da    PI: 8.568
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35310_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.31.7e-171999274
                    trihelix  2 WtkqevlaLiearremeerlr........rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74
                                Wt +e+l+Liea++ ++er          rgk  + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ +++
  Cotton_A_35310_BGI-A2_v1.0 19 WTVNETLVLIEAKKMDDERRMkrsgdiegRGKPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRTAER 99
                                *************977666662222222224799***************************************99986443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1311183IPR017877Myb-like domain
PfamPF138371.2E-131897No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MADQGGDNIV SREYRKGNWT VNETLVLIEA KKMDDERRMK RSGDIEGRGK PTELRWKWVE  60
DYCWRKGCLR SQNQCNDKWD NLMRDYKKVR EYQRRTAERG EGTHSNEGSS YWEMEKNERK  120
VKNLPSNMLR LIYERLEEVV DKKGDKTAVA AGGSGLIPNI PYVMDRPITS VETSLPPLLQ  180
HQLLAPIPAA IPLTLPAPPQ LPPPPIAAAA AAPLVQPPPL SYAQPLPTMC DSSDSDTSEY  240
SDSPAKRRKR GTGNGEGSSG GTASANNSNE VGTAISKSAS IIVEAIQASE EREERRHRDL  300
VSLHERRLKM EESKTEMDKR GLDGLVDAIN KLANSILALA THMKQSAPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445521.10.0PREDICTED: uncharacterized protein LOC105769437 isoform X1
TrEMBLA0A2P5RHP50.0A0A2P5RHP5_GOSBA; Uncharacterized protein
STRINGGorai.009G150000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-61Trihelix family protein