PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35264_BGI-A2_v1.0
Common NameF383_19716
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 384aa    MW: 43158.4 Da    PI: 7.7762
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35264_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.2e-101101471954
                                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                 Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Cotton_A_35264_BGI-A2_v1.0 110 FEHflHPYPKDSDKHMLAKQTGLTRNQVSNWFINARVR 147
                                 554459******************************88 PP
2BELL55.51.4e-181433072
                        BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                                +q+v+ss e +ag g+ak+Yt +A+++iS++FrcLkd i+eqi
  Cotton_A_35264_BGI-A2_v1.0  1 MQIVVSSLEKAAGFGAAKSYTGIASRTISKQFRCLKDSISEQI 43
                                9*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.1E-12140IPR006563POX domain
PROSITE profilePS5007112.0588151IPR001356Homeobox domain
CDDcd000861.22E-1191152No hitNo description
SMARTSM003894.9E-991155IPR001356Homeobox domain
SuperFamilySSF466895.13E-1793158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.0E-2994157IPR009057Homeodomain-like
PfamPF059201.9E-18108147IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MQIVVSSLEK AAGFGAAKSY TGIASRTISK QFRCLKDSIS EQIKATSKIL GEDDCLGVKL  60
EGSRLRYVDY QLRQQRALQQ LGMIQHNNNV WRPQRGLPER AVSVLRAWLF EHFLHPYPKD  120
SDKHMLAKQT GLTRNQVSNW FINARVRLWK PMVEEMYLEE MKEHEMKGGE ENTNKSEQKE  180
SGSTSSKSNA QQQEMNASPT HQFSNSTIST SPMEGSLMPP QTSFNLIGSS EFDNGVGLAQ  240
RASKKSRNAN DELQNSPMEM KPGETWETNI NMIKLGDEER LLKHSFSYLS GTAYSSMGEI  300
GRFNEEQQLP PKFHGNSVSL TLGLPHCENL SLSGNPQNFL SNHNIQLGIN TPHASHSNAA  360
GFDNIHEMQN RQRFAAQLLP DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-1697155563Homeobox protein Meis2
3k2a_B1e-1697155563Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5260251e-137HQ526025.1 Gossypium herbaceum clone NBRI_C_6055 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017629922.10.0PREDICTED: BEL1-like homeodomain protein 1
SwissprotQ9SJ563e-91BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0B0MHW70.0A0A0B0MHW7_GOSAR; BEL1-like homeodomain protein 1
STRINGGorai.001G125400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16274513
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-83BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]