PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_35203_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 257aa    MW: 28010.2 Da    PI: 8.7106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_35203_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-202675255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa a++aa+++++g
  Cotton_A_35203_BGI-A2_v1.0 26 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAATAYDAAAREFRG 75
                                69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-132675IPR001471AP2/ERF domain
PROSITE profilePS5103223.4462683IPR001471AP2/ERF domain
CDDcd000183.17E-192683No hitNo description
SuperFamilySSF541713.2E-222684IPR016177DNA-binding domain
SMARTSM003805.1E-382689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-322683IPR001471AP2/ERF domain
PRINTSPR003671.6E-102738IPR001471AP2/ERF domain
PRINTSPR003671.6E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MAPREKSTAA VKGNGNSGGG ISKEVHFRGV RKRPWGRYAA EIRDPGKKSR VWLGTFDTAE  60
EAATAYDAAA REFRGSKAKT NFPLPCENIN NVVNVTNCDN NINNNGKINI NINNNQSSSQ  120
SSTVESLSLE PTTIMIDSSP LDLNLGRRSI TGFGSSTVRF PFHQVSTGTG VFHAAGMPTI  180
ASPQVFYFDA FVRSGGMLKG QQYQRMTFDH HDFHTVFNGG VQSDSDSSSV VDLNHHEIKP  240
RPLLNIDLNQ PALPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-242684261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610387.10.0PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLA0A1U8HXW51e-141A0A1U8HXW5_GOSHI; ethylene-responsive transcription factor 4-like
STRINGGorai.006G088000.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2501134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-28erf domain protein 9