PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_35158_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 990aa MW: 110371 Da PI: 7.9369

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_35158_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.2	3.2e-09	175	196	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 t lC++f++ G C++G++C+F H Cotton_A_35158_BGI-A2_v1.0 175 TQLCKDFMA-GRCRRGSQCHFLH 196 78*****.*********** PP
2	zf-CCCH	21.2	5.1e-07	238	257	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +f++ G C++G++C+FaH+ Cotton_A_35158_BGI-A2_v1.0 238 CTDFLK-GNCRRGASCRFAHD 257 9***.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	15.009	172	199	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-5	172	198	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.19E-5	174	197	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	175	196	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-8	175	197	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15	232	259	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-4	232	258	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-5	235	257	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-5	238	257	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.981	296	323	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.28	296	322	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.02E-5	299	321	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 990 aa Download sequence Send to blast
MSGSRKRGSK WNSKEEQQYS LENVRDKAWS AKVSAPFHDR ESEHGYFSAE VGRKDKWSVV 60 GVGDMMKSKH GMPSRESFHG SRGGEKDDNN DFVKNWKTTT PWDGDETYSM KMSPGLDDWR 120 LKKRHSSPKG DWNGSHRSRS WSRSRSRSRS RSPVRSVRWQ SGLHERTRNR SGVSTQLCKD 180 FMAGRCRRGS QCHFLHQDIQ SREDGWDNRQ KRAGVSKYIT HDDCKDYLVK SGRSTDCCTD 240 FLKGNCRRGA SCRFAHDGAT DGFGRRTTNE ISSERENTKR NRIRTPDRDG EREARRSSDI 300 PCKFFASGNC HNGKYCRFSH HGQARASPDR RSRGDRGVWC PSSINVDRLQ DGPTLRDTDA 360 SFNVNKSWNA PERSDANVIN EAEIPWNGPK WSDLDASNDA NNSWTSSKWS DAEASNDANN 420 LWTGSKWSDT GAYLGATKFS KDTIAKNGAS EPRFSNWSMD ERWRHNYDVS GKNIEADVQY 480 KTVDIDKDEQ TPTKIENSGV NIGVSEPKGA EESLGDMEMS PEWNYKIQSS VKKELTHGSK 540 PAIVETLLHS QERNITEEAS GQVHDGLAAL QPMLTEKSNV HQDHLMRCSS GVALPCVSNA 600 LNTTSNSHIV LNFCINNTPL PSFDQPGPSP STLPCSNLDA VGQSQVTIPS NEVTKEDAQN 660 GLLFHEEKRS NELNIGDANV LHGNSGSKST QTMVSNEQLT QLTNLSASLA QLFGKGQQLP 720 LLHAALNAHN GMQVTSIANS GSHIEPDSMP NLQPDQDITF PKIYDPISDS IEPAKKQGTD 780 TKPLGFSIQP VAEKNTDGQP ELSANKLLPS SLLCSNNDDD YHNDLSSRRE PDFDSHKPNQ 840 LEPVASSEAK KKNEGVEETK KAEGENGPSE SGDADDKTDE AKKNKDSKGI RAFKFALVEF 900 VKDLLKPTWK EGQIGKEAYK NIVKKVVDKV IATVQGTNIP QTPEKIDQYL SFSKPKLSKL 960 VQLSRLLHLL SFVPFLYLVS APLKNANLFN

Sequence ? help Back to Top

Protein Sequence Length: 990 aa Download sequence Send to blast

MSGSRKRGSK WNSKEEQQYS LENVRDKAWS AKVSAPFHDR ESEHGYFSAE VGRKDKWSVV  60
GVGDMMKSKH GMPSRESFHG SRGGEKDDNN DFVKNWKTTT PWDGDETYSM KMSPGLDDWR  120
LKKRHSSPKG DWNGSHRSRS WSRSRSRSRS RSPVRSVRWQ SGLHERTRNR SGVSTQLCKD  180
FMAGRCRRGS QCHFLHQDIQ SREDGWDNRQ KRAGVSKYIT HDDCKDYLVK SGRSTDCCTD  240
FLKGNCRRGA SCRFAHDGAT DGFGRRTTNE ISSERENTKR NRIRTPDRDG EREARRSSDI  300
PCKFFASGNC HNGKYCRFSH HGQARASPDR RSRGDRGVWC PSSINVDRLQ DGPTLRDTDA  360
SFNVNKSWNA PERSDANVIN EAEIPWNGPK WSDLDASNDA NNSWTSSKWS DAEASNDANN  420
LWTGSKWSDT GAYLGATKFS KDTIAKNGAS EPRFSNWSMD ERWRHNYDVS GKNIEADVQY  480
KTVDIDKDEQ TPTKIENSGV NIGVSEPKGA EESLGDMEMS PEWNYKIQSS VKKELTHGSK  540
PAIVETLLHS QERNITEEAS GQVHDGLAAL QPMLTEKSNV HQDHLMRCSS GVALPCVSNA  600
LNTTSNSHIV LNFCINNTPL PSFDQPGPSP STLPCSNLDA VGQSQVTIPS NEVTKEDAQN  660
GLLFHEEKRS NELNIGDANV LHGNSGSKST QTMVSNEQLT QLTNLSASLA QLFGKGQQLP  720
LLHAALNAHN GMQVTSIANS GSHIEPDSMP NLQPDQDITF PKIYDPISDS IEPAKKQGTD  780
TKPLGFSIQP VAEKNTDGQP ELSANKLLPS SLLCSNNDDD YHNDLSSRRE PDFDSHKPNQ  840
LEPVASSEAK KKNEGVEETK KAEGENGPSE SGDADDKTDE AKKNKDSKGI RAFKFALVEF  900
VKDLLKPTWK EGQIGKEAYK NIVKKVVDKV IATVQGTNIP QTPEKIDQYL SFSKPKLSKL  960
VQLSRLLHLL SFVPFLYLVS APLKNANLFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RSRSRSRSR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313496	1e-138	KF313496.1 Firmiana danxiaensis microsatellite a44026_SSR39 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641618.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBL	A0A0D2QP80	0.0	A0A0D2QP80_GOSRA; Uncharacterized protein
STRING	Gorai.003G068000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15764	9	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-08	C3H family protein