PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34158_BGI-A2_v1.0
Common NameF383_15353
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 256aa    MW: 28842.7 Da    PI: 7.6771
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34158_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-19112166256
                                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 rk+ ++t++q  +Le+ F++++++s ++++ LA +l+L  rqV vWFqNrRa+ k
  Cotton_A_34158_BGI-A2_v1.0 112 RKKLRLTRQQSSILEDKFKQHSTLSPKQKQALAVELNLRPRQVEVWFQNRRARTK 166
                                 78889************************************************98 PP
2HD-ZIP_I/II117.57.6e-38112200190
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 +kk+rl+++q+++LE++F+++++L+p++K++la eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk++y++l+een+rL+ke
  Cotton_A_34158_BGI-A2_v1.0 112 RKKLRLTRQQSSILEDKFKQHSTLSPKQKQALAVELNLRPRQVEVWFQNRRARTKLKQTEVNCELLKKCYETLTEENKRLQKE 194
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLree 90 
                                 veeL+ +
  Cotton_A_34158_BGI-A2_v1.0 195 VEELK-S 200
                                 ****9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-18107169IPR009057Homeodomain-like
PROSITE profilePS5007117.119108168IPR001356Homeobox domain
SMARTSM003891.9E-16110172IPR001356Homeobox domain
CDDcd000866.76E-16111169No hitNo description
Gene3DG3DSA:1.10.10.609.3E-18112166IPR009057Homeodomain-like
PfamPF000461.4E-16112166IPR001356Homeobox domain
PROSITE patternPS000270143166IPR017970Homeobox, conserved site
PfamPF021831.5E-8168201IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.8E-20168211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGLDDICNTA LGLGLGCLVK QENISQLDHH QQKKQQLFLK HDHFSPSLLS LAPSYDTCAI  60
IDAYQQQASS LSAASSFSNS SVKRERDLGG EEVELERICS RVSDEDDEGS PRKKLRLTRQ  120
QSSILEDKFK QHSTLSPKQK QALAVELNLR PRQVEVWFQN RRARTKLKQT EVNCELLKKC  180
YETLTEENKR LQKEVEELKS LKVTAPCYMQ VGAATLTMCP SCERVDNVGE NPSTTLFTLG  240
QKSHFITPFT HPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160168RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5269240.0HQ526924.1 Gossypium herbaceum clone NBRI_B2_832 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633246.10.0PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466044e-78HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A0B0N5S40.0A0A0B0N5S4_GOSAR; Homeobox-leucine zipper HAT22-like protein
STRINGGorai.005G098200.11e-172(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-76HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]