PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34013_BGI-A2_v1.0

Common Name

F383_31652

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 338aa MW: 37665.6 Da PI: 8.5827

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34013_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.5	3.1e-17	19	110	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 Wt +e+++Liea++ ++er +++ + +W++v +++++rg+ rs++qC++kw+nl ++ykk++e +++ t+++ Cotton_A_34013_BGI-A2_v1.0 19 WTVNETMVLIEAKKMDDERRMKKSwegegkgkPTELRWKWVEDYCWSRGCLRSQNQCNDKWDNLMRDYKKVREYQRR-TAGAG 100 ***********97766666532222233339999*************************************98.56776 PP trihelix 77 stcpyfdqle 86 + + ++e Cotton_A_34013_BGI-A2_v1.0 101 DNQGSYWEME 110 7777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.039	11	83	IPR017877	Myb-like domain
Pfam	PF13837	7.1E-13	18	110	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MADQGGNNIG MREYRKGNWT VNETMVLIEA KKMDDERRMK KSWEGEGKGK PTELRWKWVE 60 DYCWSRGCLR SQNQCNDKWD NLMRDYKKVR EYQRRTAGAG DNQGSYWEME KNERKEKNLP 120 TNMLRQISEC LEEVVDKKGG QRVVLLATAT ASGSLPIPNI PDVMDRPITS VQLPPILQHQ 180 LPPIPAAVPL PLTAPPQLPL PTAAPTPLLQ PPFSYAQPLP TVDSDTSEYS DSLAKRRRRS 240 GGNGEGTSSG AATANNSNEA GIAISKSASI IAEAIQASEE NEERRHRDLV SLHERILKIE 300 ESKTEINKRG IDGLVDAINK LANSILAFAS HKNQSAPK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636824.1	0.0	PREDICTED: uncharacterized protein LOC108478878
TrEMBL	A0A0B0MU80	0.0	A0A0B0MU80_GOSAR; Trihelix transcription factor GT-4-like protein
STRING	Gorai.010G171500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	9e-71	Trihelix family protein