PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_33861_BGI-A2_v1.0 | ||||||||
Common Name | F383_28467 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 763aa MW: 85400.5 Da PI: 6.5579 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.9 | 5e-20 | 622 | 718 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 +kvl++sdv+++gr+vlpkk ae+h +++ + ++ + +ed ++r+W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf Cotton_A_33861_BGI-A2_v1.0 622 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRTNGLQEGDF 703 79*************************999999********7778*******99777777777777.**************** PP EEEEE-SS.SEE..EEE CS B3 80 vvFkldgr.sefelvvk 95 +v++ ++ ++++++++ Cotton_A_33861_BGI-A2_v1.0 704 IVIY--SDvKCGKYLIR 718 ****..55599988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.7E-28 | 616 | 729 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 1.62E-37 | 619 | 720 | No hit | No description |
SuperFamily | SSF101936 | 1.51E-22 | 620 | 714 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.687 | 621 | 723 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-19 | 621 | 723 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 622 | 717 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 763 aa Download sequence Send to blast |
MRGVQQQQQQ QQKMGGEDVH AVGGNEGNPS GFDDVVVEVE RVMGSEEREM WLDRQQDDEL 60 LDVNDASIFY GDFPPLPDFP CMSSSSSSSS TPAPVKAIAC SSSASTASSS SSAASWAVLK 120 SDADEDMERK NNGHHIHLHH HHHQNYIQNS HQQEHHGKVD GTPAALSSTA STEIPQPQDQ 180 NVMDGVDCMD VMENFGYMDL IDNNDLFDPS SIFHHDDTGL EEFQQDQQNQ QQQEHDSTQQ 240 QLGQQVGAMM YSKNEDQTQE EKASDDLAMV FLEWLKTNKE TVSAEDLRRV KIKKATIECA 300 ARRLGGGKEA MKQLLKLILE WVQTNHLQRR RIKESASNNQ PDHPYQYSNP NNLNSSSNPN 360 LNCNPILPSE PNSCFSQPAW VPQPAYTTDP EAAPPPLPGF TPVVGYMGDP FANGAPNVTT 420 HHHPYQPPTD YQVLDTAQTW PPSQFALAAS QYNSFADNNL HPAPLQQQPS AFPGYVNQYP 480 YHYVPGHNNN DQRLLRLGSS ATKEARKKRM ARQRRFASHH RNHGHHHNNQ QSQLQNQSID 540 QHERLVKGNC VAAAQANPGN WVYWPSVAGA LASNPPPVLP GDVTMVHPVD QPTMQGQTYQ 600 RQVATDRRQG WKPEKNLRFL LQKVLKQSDV GNLGRIVLPK KEAETHLPEL EARDGISIAM 660 EDIGTSRVWN MRYRFWPNNK SRMYLLENTG DFVRTNGLQE GDFIVIYSDV KCGKYLIRGV 720 KVRQSGTKSE TKRPGKSQKN HHTNSPSAAV NGSLPTPITQ TVK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 2e-36 | 617 | 724 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 2e-36 | 617 | 724 | 1 | 108 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Participates in abscisic acid-regulated gene expression during seed development. Regulates the transcription of SGR1 and SGR2 that are involved in leaf and embryo degreening. {ECO:0000269|PubMed:19531597, ECO:0000269|PubMed:24043799}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by silencing mediated by polycomb group (PcG) protein complex containing EMF1 and EMF2. {ECO:0000269|PubMed:19783648}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614337 | 1e-84 | JX614337.1 Gossypium hirsutum clone NBRI_GE57639 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017640096.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor ABI3 isoform X2 | ||||
Swissprot | Q01593 | 0.0 | ABI3_ARATH; B3 domain-containing transcription factor ABI3 | ||||
TrEMBL | A0A0B0MR68 | 0.0 | A0A0B0MR68_GOSAR; B3 domain-containing transcription factor ABI3-like protein | ||||
STRING | Gorai.001G184300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10280 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 0.0 | B3 family protein |