PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_33158_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 310aa MW: 35849.2 Da PI: 8.6051 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.7 | 4e-48 | 5 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 pGfrFhPtdeelv +yL++kve+k++++ e ik++diy+++PwdLpk + +ekewyf++kr +ky+++ r+nr+t sg+Wk Cotton_A_33158_BGI-A2_v1.0 5 LPGFRFHPTDEELVGFYLRRKVEKKPISI-ELIKQIDIYQYDPWDLPKVSNVGEKEWYFYCKRGRKYRNSIRPNRVTGSGFWK 86 59***************************.89***************8888899***************************** PP NAM 85 atgkdkevlskkgel.......................vglkktLvfykgrapkgektdWvmheyrl 128 atg dk+++s+++++ +glkk+Lv+y+g a kg+ktdW+mhe+rl Cotton_A_33158_BGI-A2_v1.0 87 ATGIDKPIYSSSTKEphhhhhhhhhqhdrhqhqhlctcIGLKKSLVYYRGCAGKGTKTDWMMHEFRL 153 **********83333555666777788899999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.854 | 4 | 177 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.7E-50 | 5 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-24 | 6 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
EEIKLPGFRF HPTDEELVGF YLRRKVEKKP ISIELIKQID IYQYDPWDLP KVSNVGEKEW 60 YFYCKRGRKY RNSIRPNRVT GSGFWKATGI DKPIYSSSTK EPHHHHHHHH HQHDRHQHQH 120 LCTCIGLKKS LVYYRGCAGK GTKTDWMMHE FRLPPNGNHT TNAQEAEVWT LCRIFKRTPP 180 NNKYPPTTVA STAAWKFSAT TTIKQNGTDS PTTCRSSMED VSQSQNSYDK CKSLCDTVIQ 240 QKGNKPDMDE VDARNYFLYG STLPLSTQQA PFTSTNFPTF CNHPNGDVDV FSNGNWDELR 300 PVVEVALEPY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 6 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 6 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 6 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 6 | 183 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 4e-46 | 6 | 177 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 3e-46 | 6 | 183 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 6 | 183 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610399.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 2e-85 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8KNE9 | 0.0 | A0A1U8KNE9_GOSHI; transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
STRING | Gorai.001G091900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 9e-88 | NAC domain containing protein 42 |