PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32829_BGI-A2_v1.0

Common Name

F383_02612

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 428aa MW: 45582.9 Da PI: 6.8468

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32829_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.3	4.3e-11	227	272	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cotton_A_32829_BGI-A2_v1.0 227 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 272 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.84E-16	220	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.19E-12	220	276	No hit	No description
PROSITE profile	PS50888	16.723	222	271	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	224	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	227	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-12	228	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MQPCSREMQA MNSLLNPTQQ IPLQDLQING NSHHHQQIHV PSSSQFQYPT PTSTTHQDDS 60 FLEQILSSTT SFPWSDETGP PNPEDNNNAG FNYDEMVLAS KLRQHQINGG AAGNPFSAMK 120 MMLMMQQQQQ QQQMMLAGRP TVASSAAGGG ITTNHQGGEG SMQALYNVFG DGSLHGTMQA 180 KSFVGANSAT EMTQSQGSRP TAGEAVTAPE KPKQRVRARR GQATDPHSIA ERLRRVRIAE 240 RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVSEGGGDC 300 IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL 360 ATAISTATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP SMSVLTVQSA TMGNGGGLEG 420 GAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MQPCSREMQA MNSLLNPTQQ IPLQDLQING NSHHHQQIHV PSSSQFQYPT PTSTTHQDDS  60
FLEQILSSTT SFPWSDETGP PNPEDNNNAG FNYDEMVLAS KLRQHQINGG AAGNPFSAMK  120
MMLMMQQQQQ QQQMMLAGRP TVASSAAGGG ITTNHQGGEG SMQALYNVFG DGSLHGTMQA  180
KSFVGANSAT EMTQSQGSRP TAGEAVTAPE KPKQRVRARR GQATDPHSIA ERLRRVRIAE  240
RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA PLVSEGGGDC  300
IQTSANGGSH PRNSNGDQTP SANDRLTMTE HQVAKLMEED MGSAMQYLQG KGLCLMPISL  360
ATAISTATSR SRNPMINHEN PTNGSHLLIQ SSGGDGPSSP SMSVLTVQSA TMGNGGGLEG  420
GAASVSKP

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF836432	0.0	KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643623.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-83	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0B0PS27	0.0	A0A0B0PS27_GOSAR; Transcription factor bHLH66-like protein
STRING	Gorai.010G112200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-83	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]