PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_32772_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 22206.3 Da PI: 8.0576 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.6 | 5e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasn +kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++ Cotton_A_32772_BGI-A2_v1.0 9 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNASKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFA 91 7*************************99******************************************************* PP DUF260 83 lqqqleqlkaelallkee 100 lqqq++ l+ +l ++k++ Cotton_A_32772_BGI-A2_v1.0 92 LQQQVAYLQGQLMQVKAQ 109 ************999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.734 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-37 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 201 aa Download sequence Send to blast |
MASSGTGSPC GACKFLRRKC ASDCIFAPYF CSEQGPARFA AIHKVFGASN ASKLLLHIPA 60 HDRCEAVVTI AYEAQARIRD PVYGCVAHIF ALQQQVAYLQ GQLMQVKAQL AQNAMNSHNM 120 ESQWQGNLSG GPSIPTYPIY MNPISPQSSL ESVELNSADN MNMQEIQSRE EFSNIHGYSR 180 KRPYNSDLGE LQALALRMMR N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-38 | 3 | 114 | 5 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-38 | 3 | 114 | 5 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017614866.1 | 1e-150 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 4e-77 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A1U8L838 | 1e-148 | A0A1U8L838_GOSHI; LOB domain-containing protein 16-like | ||||
STRING | Gorai.007G144400.1 | 1e-147 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-79 | lateral organ boundaries-domain 16 |