PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32565_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 858aa MW: 96704.5 Da PI: 7.1323

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32565_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.3	6.8e-15	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY+ YA+++GFs+ + + +++k +g i++ +f Cs+e ++++ ++ C+a++++++++ +kw+ tk++++ Cotton_A_32565_BGI-A2_v1.0 66 FYDGYARRLGFSTHVGQFTRTKLDGPIVTWDFACSREVLKRKNVES--------------CNAMFRIERKDGKKWVATKFVED 134 9************************************9998877..............******************* PP FAR1 85 HnHela 90 HnH+++ Cotton_A_32565_BGI-A2_v1.0 135 HNHSMV 140 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-12	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.2E-31	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.214	548	584	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.4E-12	548	582	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence Send to blast
MDVGGGKGDN VRGVNIESSK GGGSNWNLIE NSTGIDVVVN PNDDGGAGGK PCVGMEFESE 60 DAGRTFYDGY ARRLGFSTHV GQFTRTKLDG PIVTWDFACS REVLKRKNVE SCNAMFRIER 120 KDGKKWVATK FVEDHNHSMV NPSKVHYLRS RRHFAGATKN VPETSDAATD VCALVDGNHV 180 SCEATRIGNT SCVDPNHLVR NMGSVGYVGL PSQRRTLGKD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RAAYNHFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQMVL 300 FGCALLLDES ESSFTWLFRT WLSAMNNRSP ISITTDQDRA IQAAVSQVFP ETRHCICKWH 360 ILREGQERLA HIYLAHPSFY GEIYGCINFS ETIEDFESSW TTLLDKYNLQ KNEWLLAVYN 420 ARKQWAPVYF RGTFFASLSS NQGVCSFFDG YINQQTTIPR FLKQYERALE RSLEREIEAD 480 CDTICTTPVL KTPSPVEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVSKYRVAK 540 YEHDDKAYFV MLNVSEMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILRRWTKS 600 AKSWVGLDDK NADPQGVETL TARFNILCQE AFKLAEEGSV VPETYSAAIN ALRDAVKKVA 660 FIKKDVAKVT PPRSYINGNS HEDGSKKTTS PVSEMVPSLW PWQDAVSPRF NLIDSGAPLT 720 DLNQPSMVPV SIDRDTDHVD STVVLSCFKS MTWAIENKNE VEACKVAVIN LKLHDYSKNP 780 LGETEVQFRL TKVTLEPMLR SMAYISQQLS TPVNRVAAIN LKLQDTKTTS GEKEVKFQVS 840 KDTLGSMLRS MAYIREQL

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence Send to blast

MDVGGGKGDN VRGVNIESSK GGGSNWNLIE NSTGIDVVVN PNDDGGAGGK PCVGMEFESE  60
DAGRTFYDGY ARRLGFSTHV GQFTRTKLDG PIVTWDFACS REVLKRKNVE SCNAMFRIER  120
KDGKKWVATK FVEDHNHSMV NPSKVHYLRS RRHFAGATKN VPETSDAATD VCALVDGNHV  180
SCEATRIGNT SCVDPNHLVR NMGSVGYVGL PSQRRTLGKD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RAAYNHFGDA VIFDTMYRPN QYQIPFAPFT GINHHGQMVL  300
FGCALLLDES ESSFTWLFRT WLSAMNNRSP ISITTDQDRA IQAAVSQVFP ETRHCICKWH  360
ILREGQERLA HIYLAHPSFY GEIYGCINFS ETIEDFESSW TTLLDKYNLQ KNEWLLAVYN  420
ARKQWAPVYF RGTFFASLSS NQGVCSFFDG YINQQTTIPR FLKQYERALE RSLEREIEAD  480
CDTICTTPVL KTPSPVEQQA ANLYTKKVFS KFQEELVETF VYTANKIEGD GIVSKYRVAK  540
YEHDDKAYFV MLNVSEMKAS CTCQMFEYSG ILCRHILTVF TVTNVLTLPS HYILRRWTKS  600
AKSWVGLDDK NADPQGVETL TARFNILCQE AFKLAEEGSV VPETYSAAIN ALRDAVKKVA  660
FIKKDVAKVT PPRSYINGNS HEDGSKKTTS PVSEMVPSLW PWQDAVSPRF NLIDSGAPLT  720
DLNQPSMVPV SIDRDTDHVD STVVLSCFKS MTWAIENKNE VEACKVAVIN LKLHDYSKNP  780
LGETEVQFRL TKVTLEPMLR SMAYISQQLS TPVNRVAAIN LKLQDTKTTS GEKEVKFQVS  840
KDTLGSMLRS MAYIREQL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243076	0.0	AC243076.1 Gossypium arboreum clone GAH047E15-jmp, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017603932.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_017603945.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Refseq	XP_017603954.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A1U8IF82	0.0	A0A1U8IF82_GOSHI; protein FAR1-RELATED SEQUENCE 3-like
STRING	Gorai.011G224000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]