PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32448_BGI-A2_v1.0 | ||||||||
Common Name | F383_11578 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33594.1 Da PI: 7.9552 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.1 | 2.3e-46 | 17 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 pGfrFhPt+eel+ +yLk+ + g+kl+ +vi ++iy+++P+dLp k + +ewyfF++rd+k+ +g r+nr+t++gyWka Cotton_A_32448_BGI-A2_v1.0 17 PGFRFHPTEEELLGFYLKNMIYGNKLRD-DVIGFLNIYHHDPSDLPGLSKIGGREWYFFVPRDRKHGNGGRPNRTTENGYWKA 98 9************************999.99***************8778899****************************** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+d++++s ++ +glkktLvfykgrap+g+ktdWvm+eyrl Cotton_A_32448_BGI-A2_v1.0 99 TGSDRKIVSLsdPKRITGLKKTLVFYKGRAPRGNKTDWVMNEYRL 143 *******997666777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.977 | 15 | 161 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 5.23E-56 | 16 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MNCQSNSDDT TLEMELPGFR FHPTEEELLG FYLKNMIYGN KLRDDVIGFL NIYHHDPSDL 60 PGLSKIGGRE WYFFVPRDRK HGNGGRPNRT TENGYWKATG SDRKIVSLSD PKRITGLKKT 120 LVFYKGRAPR GNKTDWVMNE YRLPDGCSLP KDIVLCKIYR KATSLKVLEQ RAALEEELKA 180 TNTTTSSPLS SLQTISFCNP KEDLVPSISE TREFFKKEIE EEKELVEEKK DRIAKENKVS 240 PPSLHFPVGN EKLAELQLPK IINDWTQDQF WTQLNSPWFQ NLTPYANILN F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-45 | 9 | 161 | 8 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC110646 | 0.0 | KC110646.1 Gossypium hirsutum NAC protein 11 (NAC11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636562.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q10S65 | 1e-92 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0B0M7U7 | 0.0 | A0A0B0M7U7_GOSAR; Putative NAC domain-containing 94-like protein | ||||
STRING | Gorai.008G038800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-108 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
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