PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32408_BGI-A2_v1.0

Common Name

F383_16691

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 306aa MW: 33903.6 Da PI: 6.501

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32408_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	232.8	5.7e-72	90	240	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqs 84 ++g+++CqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaakrrerqqqlaa++++++++ + ++ kr +++ + Cotton_A_32408_BGI-A2_v1.0 90 KHGGMNCQDCGNQAKKDCAHMRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLAALQHHQQHEDQFRGENPKRLRENQGSP 172 6899****************************************************9999988855555555555568888 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +l++t+ls ++s le ++P+evss+avfrcv+vs++dd++ee+aYqtav+i+GhvfkGiLydqG+e+ Cotton_A_32408_BGI-A2_v1.0 173 SLACTRLSPTTSG--LELGQFPPEVSSPAVFRCVKVSAMDDEDEEFAYQTAVNIAGHVFKGILYDQGPES 240 9999999988765..88899**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.9E-68	93	239	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-27	95	137	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.8E-27	190	238	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MAGLFYLGGR EADTGNKQEE DKEESLYLYR NEEIYNKGFE IWPQYYYQQQ QQQQENVNTI 60 SFGAGPSRIA TGFNLSDEPS SRSVGFTVMK HGGMNCQDCG NQAKKDCAHM RCRTCCKSRG 120 FQCQTHVKST WVPAAKRRER QQQLAALQHH QQHEDQFRGE NPKRLRENQG SPSLACTRLS 180 PTTSGLELGQ FPPEVSSPAV FRCVKVSAMD DEDEEFAYQT AVNIAGHVFK GILYDQGPES 240 HYTGGGESSQ QLNLITAAVT TAETARTTTT AATSSNAGTS MLDPCLYPAP LNAFIAGTQF 300 FPPPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616287	1e-176	JX616287.1 Gossypium hirsutum clone NBRI_GE60826 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641192.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	1e-103	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0B0NK51	0.0	A0A0B0NK51_GOSAR; Uncharacterized protein
STRING	Gorai.002G125600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	8e-90	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]