PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32020_BGI-A2_v1.0
Common NameF383_24227
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 348aa    MW: 39729.5 Da    PI: 5.3268
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32020_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28129190159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDgy+WrKYGqK++ gs+fpr+YYrCt++   gC + k+++rs+edp+++e++Y+g+H+++
  Cotton_A_32020_BGI-A2_v1.0 129 LDDGYCWRKYGQKDILGSNFPRGYYRCTHRysqGCLAGKQIQRSDEDPTIFEVKYRGRHTCN 190
                                 59***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-28119191IPR003657WRKY domain
PROSITE profilePS5081123.124124187IPR003657WRKY domain
SuperFamilySSF1182904.18E-25127191IPR003657WRKY domain
SMARTSM007742.8E-38129191IPR003657WRKY domain
PfamPF031063.5E-24130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEKTMDWEQN TLLNELTQGR DFTNMLRKHL HPSSSPETRQ VLLDKILCSY DKALSLLNCS  60
GYMVETKPRV STLGSPESDA SDKKDMFKKR KCRTYAFLFS PLLLNSGKTS SGWSEQIRVC  120
SATSLEGPLD DGYCWRKYGQ KDILGSNFPR GYYRCTHRYS QGCLAGKQIQ RSDEDPTIFE  180
VKYRGRHTCN QVSHLVATPK EKGNHYREKQ QVEEKQKQSE EMLLSFETEL KVNTEDLDKR  240
ENIFPSFSFP IESEEVQNGL LRNSLMKNIS PAFVSPATSE SNYFSVSAFQ MGSFDFSQNV  300
QTSESELTEI ISAPASVTNS PIVDLDISSL EKLEFDQSFP FDNPEFFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-20129189868OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258760.0KJ825876.1 Gossypium hirsutum WRKY protein 34 (WRKY34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614331.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A0B0P6P10.0A0A0B0P6P1_GOSAR; Putative WRKY transcription factor 46-like protein
STRINGGorai.001G155800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.17e-53WRKY DNA-binding protein 46