PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31896_BGI-A2_v1.0

Common Name

F383_05194

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SRS

Protein Properties

Length: 307aa MW: 34140.9 Da PI: 7.3785

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31896_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	228.2	1.5e-70	83	242	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel....k 79 r+g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++++++++ + + +kr++e+ Cotton_A_31896_BGI-A2_v1.0 83 RQGGINCQDCGNQAKKDCLHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQEEQHQfRGEIPKRQKENqggvV 165 67999**************************************************99998887767788888888867766 PP DUF702 80 skkqsalsstklssae..skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +l++t+ls ++ +++ le ++P+evss+avfrcv+vs++dd +ee+aYqtav+i+GhvfkGiLydqG+e+ Cotton_A_31896_BGI-A2_v1.0 166 VTDVPSLACTRLSPTTttTTSGLELGQFPPEVSSQAVFRCVKVSAMDDVDEEFAYQTAVNIAGHVFKGILYDQGPES 242 677778888888755400455677888**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.2E-66	86	241	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.7E-27	88	130	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.6E-26	192	240	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MAGFFYLTGN KQEDKEESLH LYRNEEIYNS NNKGFEIWPQ YYYQQPQQAN VVSSTYPFGT 60 GPSRRTIGGG FNLSDESSSS RLRQGGINCQ DCGNQAKKDC LHLRCRTCCK SRGFQCQTHV 120 KSTWVPAAKR RERQQQLATL QQQEEQHQFR GEIPKRQKEN QGGVVVTDVP SLACTRLSPT 180 TTTTTSGLEL GQFPPEVSSQ AVFRCVKVSA MDDVDEEFAY QTAVNIAGHV FKGILYDQGP 240 ESRYTGGGSG SRENSEQQQQ LNLMADTTTT AMATSSNIGT NMLDPSVYPA PINAFIAGTQ 300 FFPHPRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX583895	1e-127	JX583895.1 Gossypium hirsutum clone NBRI_GE17047 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610249.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9LQZ5	5e-87	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	A0A0B0NGN1	0.0	A0A0B0NGN1_GOSAR; Uncharacterized protein
STRING	Gorai.010G006800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2645	25	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	5e-71	SHI-related sequence 5

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]