PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31814_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 145aa MW: 16366.8 Da PI: 6.9432

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31814_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.1	1.6e-34	2	93	8	99
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 lrr+C ++C+lapyfp ++p kfa vhk+FGasnv+k+++ ++e++r+da+++lvyeA+ar+rdPvyG++g+i++lq+ ++ lk Cotton_A_31814_BGI-A2_v1.0 2 LRRRCDSNCILAPYFPGDEPDKFAGVHKVFGASNVIKMIQMVEETNRQDAVKALVYEARARLRDPVYGSTGTIFQLQKMVQDLKL 86 89**********************************************************************************9 PP DUF260 93 elallke 99 +l+++++ Cotton_A_31814_BGI-A2_v1.0 87 QLKSTNA 93 9998775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.168	1	95	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-34	1	92	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MLRRRCDSNC ILAPYFPGDE PDKFAGVHKV FGASNVIKMI QMVEETNRQD AVKALVYEAR 60 ARLRDPVYGS TGTIFQLQKM VQDLKLQLKS TNARVLELQQ QKDQLLGIFM NVDHLDVPSS 120 VDHGLSFSLD YEDSMASNLL IGKPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-30	1	96	17	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-30	1	96	17	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016724749.1	1e-104	PREDICTED: LOB domain-containing protein 1-like
TrEMBL	A0A1U8MGR7	1e-103	A0A1U8MGR7_GOSHI; LOB domain-containing protein 1-like
TrEMBL	A0A2P5YMK5	1e-103	A0A2P5YMK5_GOSBA; Uncharacterized protein
STRING	Gorai.004G151300.1	1e-100	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24960	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-40	LOB domain-containing protein 11