PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31763_BGI-A2_v1.0
Common NameF383_03997
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 336aa    MW: 38426.7 Da    PI: 10.1962
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31763_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.34.8e-31269326359
                                 -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ve++ edp+++++tYeg+Hnh+
  Cotton_A_31763_BGI-A2_v1.0 269 DQYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVEKCLEDPSMLIVTYEGDHNHS 326
                                 9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.7E-18220265IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-33255326IPR003657WRKY domain
PROSITE profilePS5081129.482262328IPR003657WRKY domain
SuperFamilySSF1182901.96E-26265326IPR003657WRKY domain
SMARTSM007741.4E-36267327IPR003657WRKY domain
PfamPF031062.2E-26269325IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEEVEEANKA AIESCNKVLS HLSLSKDQIQ FSNLMIETDE AVFKFKKVVS LLSSNGRKRR  60
KFKKITSNLP ENIFLETPNC TTTLSPKPLQ VYPHPNLLDK RTSIEVDFRA QHQLQLTQNL  120
FDQKNQNPSF QMMNSSLVHH HHHHHQQRVQ FQQMKNQAAD MMFSKSNSGM NLKFDGSLSP  180
TMSFLSSLSM DHGSVNSLDG NSFHLIDIPR NFGQLSHQSR RCSFRGEDGN FKCGTSTTKC  240
HCSKRRKLRI KRTIKVPAIS NKVADIPPDQ YSWRKYGQKP IKGSPHPRGY YKCSSVRGCP  300
ARKHVEKCLE DPSMLIVTYE GDHNHSRFLS TQSAHT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-192653251574Probable WRKY transcription factor 4
2ayd_A2e-192653251271WRKY transcription factor 1
2lex_A2e-192653251574Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697940.0KF669794.1 Gossypium hirsutum WRKY transcription factor 23 (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017634188.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-108WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A0B0MY130.0A0A0B0MY13_GOSAR; Putative WRKY transcription factor 74-like protein
STRINGGorai.004G247000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38852359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.11e-100WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]