PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_31330_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 245aa MW: 27328.7 Da PI: 7.0286 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.9 | 2.3e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ +Le+++ + r+psa+++++++++l +++ ++V++WFqN++a++++ Cotton_A_31330_BGI-A2_v1.0 18 SRWNPTKEQISILESFYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 77 6*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.2 | 1.3e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQi iLe+ y +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq Cotton_A_31330_BGI-A2_v1.0 17 DSRWNPTKEQISILESFYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 79 68***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.867 | 13 | 78 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-13 | 15 | 84 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-6 | 15 | 82 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-8 | 18 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.2E-18 | 18 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.18E-6 | 19 | 73 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 245 aa Download sequence Send to blast |
MEGGNMDTSG DGGTTGDSRW NPTKEQISIL ESFYLQGLRT PSADQIQQIT SRLKAYGSIE 60 GKNVFYWFQN HKARQRQKQK QQNLAYINRY LYRTTQPVYS PPPHGINVVC GPHFLPQVQL 120 GIYPQIQCPK VLLPGGDKRR ERPAKMGKPL QRDYNTMLPD AENFEGLLNI NNHETLELFP 180 LHPTGLLETK ETLMSPLGST NSAGISIITP SISCETTAGI DQEGSGTGEQ QFFDFFTCQG 240 SSARD |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ527993 | 1e-41 | HQ527993.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GID8O simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017633108.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 2-like | ||||
TrEMBL | A0A2P5XL03 | 1e-179 | A0A2P5XL03_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G108900.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6914 | 28 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59340.1 | 3e-41 | WUSCHEL related homeobox 2 |