PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31029_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 182aa    MW: 20571.1 Da    PI: 5.721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31029_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-183787155
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                s ++GVr ++ +gr+v+eIr p   g+++r++lg+fg++e+Aa+a++ a+  l+g
  Cotton_A_31029_BGI-A2_v1.0 37 SPFRGVRKRR-WGRYVSEIRLP---GQKTRIWLGSFGSPEMAARAYDSAAFFLKG 87
                                679****887.**********8...557**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7053895IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-193896IPR016177DNA-binding domain
SMARTSM003801.1E-3238101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-273996IPR001471AP2/ERF domain
PfamPF008473.7E-113987IPR001471AP2/ERF domain
CDDcd000186.95E-273997No hitNo description
PRINTSPR003671.1E-103950IPR001471AP2/ERF domain
PRINTSPR003671.1E-107797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSLAEKELCE FQSQTPAQPQ PNPHPVAKKR TRQDNHSPFR GVRKRRWGRY VSEIRLPGQK  60
TRIWLGSFGS PEMAARAYDS AAFFLKGDSA ILNFPELVGS LPRPESCSRR DIQSAAAKAA  120
LEESVGRVKD EEGPESFGWW DDVGMAAFEE VKASPLRFDS MEGELLSFME DDHHFFTSCF  180
EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1636951272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12745KKRTRQDNHSPFRGVRKRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801940.0KP780194.1 Gossypium hirsutum C-repeat binding factor 11 (CBF11) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649248.11e-133PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ391276e-34TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A2P5W7Q41e-130A0A2P5W7Q4_GOSBA; Uncharacterized protein
STRINGGorai.011G113300.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2055856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.13e-36ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]