PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30905_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 503aa MW: 58497.5 Da PI: 6.5769

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30905_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.8	2e-24	71	162	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtk 80 ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke +w++++ Cotton_A_30905_BGI-A2_v1.0 71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvngVTQWYISQ 152 69******************8888.**************************************998766789* PP FAR1 81 leleHnHela 90 +++ HnHel Cotton_A_30905_BGI-A2_v1.0 153 FSNVHNHELL 162 ******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-22	71	162	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-23	294	387	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MTMKPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG 60 QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH 120 PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 180 QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK 240 RENDTLEFLE ACKAMAERDA DFVYDYTTDE NSKVENISWS YADSVRAYTV FGDVVTFDTT 300 YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD 360 IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFMPLLGSQ YEEFKAEFDM LCHLEGIEEF 420 EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LCYIRSYFLA RSMTAEFYQS LDEFFKRILS 480 GQTCLQLFFE QVCWLGMFGL LQI

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MTMKPSNNIW IRRQQCPCGD WKCYVKYEGD DQTSVSSQLI KNETTSTSSS SEAVFMPYVG  60
QIFKTDEDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVNGVTQWYI SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LELEKGVQPG QLPFIEKDVR NFVRTCKKSV QENDALLTEK  240
RENDTLEFLE ACKAMAERDA DFVYDYTTDE NSKVENISWS YADSVRAYTV FGDVVTFDTT  300
YRSITYGLLL GVWFGIDNHG KPVFLGCALL QDESLNSFAW ALQTFLRFMR GRCPQTVLTD  360
IDSSLRDAIA RELPDTKHVI CSWHVHSKLS SWFMPLLGSQ YEEFKAEFDM LCHLEGIEEF  420
EHQWNHLVAR FGLASDKHIA LLFSYRTSWP LCYIRSYFLA RSMTAEFYQS LDEFFKRILS  480
GQTCLQLFFE QVCWLGMFGL LQI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643737.1	0.0	PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A0D2RKI5	0.0	A0A0D2RKI5_GOSRA; Uncharacterized protein
STRING	Gorai.005G129200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]