PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30904_BGI-A2_v1.0
Common NameF383_11644
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 342aa    MW: 38547.7 Da    PI: 6.827
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30904_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12200225126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 y   +C+++ +tG+C yGd+CkF+H+
  Cotton_A_30904_BGI-A2_v1.0 200 YQPDICKDYKETGYCGYGDSCKFMHD 225
                                 67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.09E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878199227IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.2E-13266319IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.88E-13277320No hitNo description
PfamPF139201.5E-8277319No hitNo description
PROSITE profilePS5008910.409278316IPR001841Zinc finger, RING-type
CDDcd001622.60E-8278319No hitNo description
SMARTSM001841.8E-4278315IPR001841Zinc finger, RING-type
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MADSSEPQDP GKELRQSETE PQQSEQVCNF FRKPTKGKNI RKRTINEDED EDSRNGTSLL  60
HNQKKASKPD DKLYFSTGSS KSATATESST ESHKPVFQFE SSTEIQVQND SRATAILETE  120
TEFTKDARAI REKVLKRAED ALKGKSTISG GEKLYTGMHG YVDHKAGFRR EQTVASEKAG  180
GSHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEWE  240
EAEKARKRNL ALGEGNDDDE AGVVQSDDDD DDTLPFACFI CRQPFVDPVV TKCKHYFCEH  300
CALKHHAKNK KCFVCNQPTL GIFNAAHEIR RKMAEEGKLK GH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M7e-622533312317RING finger protein 113A
5z58_M7e-622533312317RING finger protein 113A
6ff4_t7e-622533312317RING finger protein 113A
6ff7_t7e-622533312317RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276341e-124HQ527634.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GMUBB simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643486.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_017643487.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_017643488.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-173C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0B0PX290.0A0A0B0PX29_GOSAR; Uncharacterized protein
STRINGGorai.005G129300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-156C3H family protein