PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30606_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 299aa MW: 33730.9 Da PI: 8.3158

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30606_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ ++R+ k+c++rw +yl Cotton_A_30606_BGI-A2_v1.0 14 KGPWTPEEDIILVSYIQQHGPGNWRAVPTNTALHRCSKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	50.4	5e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E++l++++ ++lG++ W++Ia++++ Rt++++k++w+++l Cotton_A_30606_BGI-A2_v1.0 67 RGNFTDHEEKLIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.294	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	9.38E-31	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	4.8E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.27E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-15	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	19.754	66	116	IPR017930	Myb domain
Pfam	PF00249	1.9E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.86E-10	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGRPPCCDKA GLKKGPWTPE EDIILVSYIQ QHGPGNWRAV PTNTALHRCS KSCRLRWTNY 60 LRPGIKRGNF TDHEEKLIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKTIN 120 GSESYSREGF SSEKHQISRG QWERKLQTDI QMAKQALADA LSPEKSSGLA SKPRGYASST 180 ENIAKLLKKW MRNPPKPVSS DNMGGIGTPW KEHKSSNSIE MSEVFESLEV FESFDSSNSD 240 FSQSLSPDQA SLFQDESKPD VNELGQLTLL EKWLFDDGAS QGKDDQLSDI KLDGNAIFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-26	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	LKKKLKT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609986.1	0.0	PREDICTED: myb-related protein 306-like
Swissprot	P81392	1e-109	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2P5YES2	0.0	A0A2P5YES2_GOSBA; Uncharacterized protein
STRING	Gorai.006G017400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5842	23	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28910.1	1e-103	myb domain protein 30

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]