PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30559_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WRKY

Protein Properties

Length: 288aa MW: 32486.2 Da PI: 10.5715

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30559_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101	6.9e-32	221	278	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh+ Cotton_A_30559_BGI-A2_v1.0 221 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEDPSMLIVTYEGEHNHS 278 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.5E-18	172	217	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.6E-34	207	278	IPR003657	WRKY domain
PROSITE profile	PS50811	30.194	214	280	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	217	278	IPR003657	WRKY domain
SMART	SM00774	1.1E-38	219	279	IPR003657	WRKY domain
Pfam	PF03106	2.1E-27	221	277	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MMKTSEAVFK FKKVVSLLNN DLSHSRVRKS KMFRSSSPQN IFLESPNCRT ILSPKPLQVY 60 PSNLFQKPPL EVKPSQDFSF VHLQQQQQQM QQRLQFQQQQ QQMKYHADMV FGKSNSGINL 120 KFDGSSCTPT MSSAGSFVSS LSLDGSVANL DGNSFHLIGM PHHFGHISQH SRKRCSGKGQ 180 DGSMKCGSSG KCHCSKRRKL RIKRSIKVPA ISNKVADIPP DEYSWRKYGQ KPIKGSPHPR 240 GYYKCSSVRG CPARKHVERC LEDPSMLIVT YEGEHNHSRL LSAHPAHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	212	277	7	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF031114	0.0	KF031114.1 Gossypium hirsutum WRKY transcription factor 100 (WRKY100) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629688.1	0.0	PREDICTED: probable WRKY transcription factor 74
Swissprot	Q93WU6	1e-107	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A1U8HTF2	0.0	A0A1U8HTF2_GOSHI; probable WRKY transcription factor 74
STRING	Gorai.007G278400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28650.1	2e-90	WRKY DNA-binding protein 74

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]