PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_30465_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 189aa MW: 21481.1 Da PI: 9.7877 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.9e-19 | 35 | 89 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa+ k Cotton_A_30465_BGI-A2_v1.0 35 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASELKLRPRQVEVWFQNRRARSK 89 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.4 | 3.3e-37 | 35 | 123 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 +kk+rlskeq++lLEesF+++++L+p++K++la+eL+l+prqv+vWFqnrRAR k+kq+E+++++Lkr+++ l+++n++L++e Cotton_A_30465_BGI-A2_v1.0 35 RKKLRLSKEQSRLLEESFRQNHTLNPRQKEALASELKLRPRQVEVWFQNRRARSKLKQTEMEFQYLKRWFEFLTKQNQELQSE 117 69********************************************************************************* PP HD-ZIP_I/II 84 veeLree 90 veeLr + Cotton_A_30465_BGI-A2_v1.0 118 VEELR-A 123 ****9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-18 | 23 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-16 | 33 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.59E-15 | 34 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 35 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.1E-16 | 35 | 89 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.5E-8 | 91 | 124 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.2E-15 | 91 | 134 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MNRLPSPGSD DEWIASTMEV VVDEENTTND GVVPRKKLRL SKEQSRLLEE SFRQNHTLNP 60 RQKEALASEL KLRPRQVEVW FQNRRARSKL KQTEMEFQYL KRWFEFLTKQ NQELQSEVEE 120 LRALQVGPPT VISPHSREPL PASTLTTCPR CERVTTISSR GAGLINTTTS TNNTSTTSAL 180 QSRPSSAAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605967.1 | 1e-136 | PREDICTED: homeobox-leucine zipper protein HOX3-like | ||||
Swissprot | Q0JKX1 | 4e-65 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 4e-65 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0D2TZ18 | 1e-133 | A0A0D2TZ18_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J2I6 | 1e-133 | A0A1U8J2I6_GOSHI; homeobox-leucine zipper protein HOX3-like | ||||
TrEMBL | A0A2P5RRZ8 | 1e-133 | A0A2P5RRZ8_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5X4U1 | 1e-133 | A0A2P5X4U1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G331300.1 | 1e-134 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-62 | homeobox-leucine zipper protein 17 |