PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29978_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 163aa MW: 19208.1 Da PI: 10.0126

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29978_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	97.9	4.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss Cotton_A_29978_BGI-A2_v1.0 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59 79***********************************************96 PP
2	K-box	96.2	5.1e-32	76	158	2	84
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 +++ ++e++ + s++ e+akLk+++e Lqr+qRh++GedLe+Lsl+eLq Le+qL+++lk+iRs+Kn+l++e+i+elqkk Cotton_A_29978_BGI-A2_v1.0 76 SERQLAANENERTGSWTLEHAKLKARMEVLQRNQRHYMGEDLENLSLRELQTLEHQLDSALKHIRSRKNQLMFESISELQKKV 158 5667777899999********************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	32.548	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.7E-40	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.55E-41	2	79	No hit	No description
SuperFamily	SSF55455	6.15E-35	2	89	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-32	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-32	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.5E-32	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	6.7E-25	85	159	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.324	88	163	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD 60 SCMERILERY ERYSYSERQL AANENERTGS WTLEHAKLKA RMEVLQRNQR HYMGEDLENL 120 SLRELQTLEH QLDSALKHIR SRKNQLMFES ISELQKKVSL CMS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_Q	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_R	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
1tqe_S	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6byy_A	5e-23	1	74	1	73	MEF2 CHIMERA
6byy_B	5e-23	1	74	1	73	MEF2 CHIMERA
6byy_C	5e-23	1	74	1	73	MEF2 CHIMERA
6byy_D	5e-23	1	74	1	73	MEF2 CHIMERA
6bz1_A	5e-23	1	74	1	73	MEF2 CHIMERA
6bz1_B	5e-23	1	74	1	73	MEF2 CHIMERA
6bz1_C	5e-23	1	74	1	73	MEF2 CHIMERA
6bz1_D	5e-23	1	74	1	73	MEF2 CHIMERA
6c9l_A	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_B	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_C	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_D	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_E	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
6c9l_F	4e-23	1	74	1	73	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM236437	0.0	HM236437.1 UNVERIFIED: Gossypium hirsutum MADS21-like mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640464.1	1e-111	PREDICTED: truncated transcription factor CAULIFLOWER A
Swissprot	Q42429	6e-95	AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBL	A0A0D2LSJ8	1e-110	A0A0D2LSJ8_GOSRA; Uncharacterized protein
STRING	Gorai.001G075800.1	1e-109	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM792	25	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	2e-91	AGAMOUS-like 8

Publications ? help Back to Top
Kang SG,Hannapel DJ Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs. Gene, 1995. 166(2): p. 329-30 [PMID:8543185]