PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29751_BGI-A2_v1.0
Common NameF383_07535
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-PHD
Protein Properties Length: 740aa    MW: 83526 Da    PI: 9.9648
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29751_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.39.8e-12510554953
                                 HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                    Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                 ++ +e L e+F++n  ps+  re L+k+lgL+ ++V  WF+N R+
  Cotton_A_29751_BGI-A2_v1.0 510 PTAVEKLREVFAENELPSRVVRENLSKELGLEPEKVNKWFKNARY 554
                                 678999*************************************97 PP
2PHD39.11.7e-13245300151
                                 SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                         PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                 +C+ C+   +  ++++vlCd +C+++fH+kCl+++l++e +p g   w+C+ C++k
  Cotton_A_29751_BGI-A2_v1.0 245 FCAKCKLreAFPDNDIVLCDgTCNRAFHQKCLDPPLDTEHIPPGdqGWFCKFCECK 300
                                 699999854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.73E-14237303IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-12242301IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.54243300IPR019787Zinc finger, PHD-finger
SMARTSM002493.2E-9245298IPR001965Zinc finger, PHD-type
PfamPF006286.9E-11245300IPR019787Zinc finger, PHD-finger
CDDcd155041.32E-32245297No hitNo description
PROSITE patternPS013590246297IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.6E-13493553IPR009057Homeodomain-like
PROSITE profilePS5007112.811499559IPR001356Homeobox domain
SuperFamilySSF466892.65E-11500564IPR009057Homeodomain-like
SMARTSM003895.9E-11501563IPR001356Homeobox domain
CDDcd000866.34E-10502561No hitNo description
PfamPF000463.2E-9510554IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MSSTKIGMRG TGKKLTDHGS AKSSSSKREA GSKLIATLKK FKNRCKISHG RVRKPKHHVK  60
KVSSTLLKRK VTASVTKGTG NDVSSARKVG CKTNLHKANK KGSSKKLGLS KLQGKNAICA  120
SLEENGKKDN ADVRIKKLTK KTKKGQKDKV ELDEASRLQR RTRYLLIKMK LEQNLIDAYS  180
GEGWKGQSRE KIKPEKELQR AKKQILKCKL GIREAIRQLD SLSSVGSIEG SVIAPDGSVY  240
HEHIFCAKCK LREAFPDNDI VLCDGTCNRA FHQKCLDPPL DTEHIPPGDQ GWFCKFCECK  300
MEIIEAMNAH IGTHFSVDSH WQDIFKDEAA FPDDANASLN PGDEWPSDDS EDDDYDPERR  360
ENSCRISGTA TDGDESDETD NSTSLSWSVD SEDLSGFGRH ENHPFDSGGD SYETSDGEIL  420
SGRRRRRAVD YRKLYDEMFG KDAPPYEQVS EDEDWGPGKR KHREKESDAA STLMTLYESE  480
TKFLNIETTE VKRQLPSDLK SRRPFFRIPP TAVEKLREVF AENELPSRVV RENLSKELGL  540
EPEKVNKWFK NARYLALKSR KVERADHLQS SSPRVSKEPE VEAPKRKDTE IMALEDMSEA  600
TLVRTPKRLK AKLRKSPNSK SVCTTVDRSP HNGLSIVSHT NSDKVSKELS DDVILKKLLN  660
VKKKGGKEKR VKIIGGGGGL EAFELEMERL CRAKVRLENM KQTLLGLESR KARKLNKRRR  720
RVHEESVIYI PIAELKEKVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1716721KRRRRV
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606566.10.0PREDICTED: pathogenesis-related homeodomain protein
RefseqXP_017606567.10.0PREDICTED: pathogenesis-related homeodomain protein
SwissprotP487851e-167PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A0B0MRS80.0A0A0B0MRS8_GOSAR; Pathogenesis-related homeodomain-like protein
STRINGGorai.009G002500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-167pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]