PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29506_BGI-A2_v1.0
Common NameF383_36507
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 296aa    MW: 32930.5 Da    PI: 7.9732
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29506_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.6e-161461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W +eEde+l +++k++G g W++ ++  g+ R++k+c++rw +yl
  Cotton_A_29506_BGI-A2_v1.0 14 KGPWAPEEDEILTNYIKKHGHGGWRSLPKLAGLLRCGKSCRLRWTNYL 61
                                79******************************99************97 PP
2Myb_DNA-binding48.12.7e-1567112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T eE++l +++++ lG++ W++Ia+ ++ +Rt++++k+ w+++l
  Cotton_A_29506_BGI-A2_v1.0  67 RGPFTLEEEKLVIQLHAILGNR-WAAIAAQFP-RRTDNEIKNLWNTHL 112
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.666961IPR017930Myb domain
SuperFamilySSF466892.51E-2911108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002496.1E-141461IPR001005SANT/Myb domain
CDDcd001671.06E-91661No hitNo description
PROSITE profilePS5129424.50662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2565116IPR009057Homeodomain-like
SMARTSM007174.1E-1466114IPR001005SANT/Myb domain
PfamPF002492.3E-1467112IPR001005SANT/Myb domain
CDDcd001671.34E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRAPCCDKK GLKKGPWAPE EDEILTNYIK KHGHGGWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TLEEEKLVIQ LHAILGNRWA AIAAQFPRRT DNEIKNLWNT HLKKRLLCMG  120
LDPQTHKPFT PCGGPTVAAP TSPATRHMAQ WESARLEAEA RLSKESLQTN SPPIAKPDSD  180
HFLRLWNSEV GESFRKINTE YKTVYPCPSP ISQTSSSAKC GSVSAVTMDV CPNIAGSLNP  240
ASNPIEETEC KSFIKSCIEE RSDSSCSSES EDSSDTALQL LLDFPINNDM SFLENC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591812e-68AJ459181.1 Gossypium hirsutum partial myb151 gene, clone pGhMYB151.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624360.10.0PREDICTED: myb-related protein 308-like
SwissprotQ9M2D91e-120MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0B0N3Y20.0A0A0B0N3Y2_GOSAR; Transcription factor MYB28-like protein
STRINGGorai.004G157600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69822643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-120myb domain protein 17