PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29346_BGI-A2_v1.0
Common NameF383_17866
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 142aa    MW: 15790.9 Da    PI: 10.8085
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29346_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.7e-2077125255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +grW+AeIrd    g+r r +lg+f+taeeAa a+++a+ kl+g
  Cotton_A_29346_BGI-A2_v1.0  77 RYRGVRQRP-WGRWAAEIRD----GRRMRLWLGTFDTAEEAAVAYDQAAVKLRG 125
                                 8********.**********....336*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.6E-383141IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000183.92E-2976132No hitNo description
Gene3DG3DSA:3.30.730.103.0E-3077133IPR001471AP2/ERF domain
SMARTSM003801.7E-3477139IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2177133IPR016177DNA-binding domain
PfamPF008473.1E-1477125IPR001471AP2/ERF domain
PROSITE profilePS5103223.45977133IPR001471AP2/ERF domain
PRINTSPR003671.3E-117889IPR001471AP2/ERF domain
PRINTSPR003671.3E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MSPPQPNGKP QQPISRRIVR ITVTDADATD SSSDEEAASP KKIQKRPKKK LVNEITIGVS  60
TKENDVMAGS SQSKVKRYRG VRQRPWGRWA AEIRDGRRMR LWLGTFDTAE EAAVAYDQAA  120
VKLRGPNAPT NFKLLDCNAV QS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-20771321471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13945PKKIQKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016738466.11e-101PREDICTED: ethylene-responsive transcription factor ERF070-like
SwissprotQ9C9955e-36ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A1U8NHG72e-99A0A1U8NHG7_GOSHI; ethylene-responsive transcription factor ERF070-like
TrEMBLA0A2P5WA872e-99A0A2P5WA87_GOSBA; Uncharacterized protein
STRINGGorai.009G355700.12e-88(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71130.18e-19ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]