PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29108_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 30574.4 Da PI: 4.7581 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144 | 8.5e-45 | 28 | 153 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyW 83 p+G+rF+P+d+elv +yLk+k+ + +l+ + i++v++y+++P++L +k+++ +e+ewyfF++rdkky++g r+nra+ +gyW Cotton_A_29108_BGI-A2_v1.0 28 PAGYRFKPRDDELVLFYLKPKLLNLRLPP-NRIRDVELYQYNPQQLIEKYESyGEEEWYFFTPRDKKYRNGLRPNRAAGDGYW 109 89************************999.77**************8555554788*************************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk ++s +++++g +k Lvfykg+ pkgektdW+mhe+rl Cotton_A_29108_BGI-A2_v1.0 110 KATGADKILKS-ESHEIGYRKALVFYKGKPPKGEKTDWMMHEFRL 153 *****988877.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-54 | 25 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.149 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-24 | 28 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSNNFGLGTM ENINNHEEDD EELLNSFPAG YRFKPRDDEL VLFYLKPKLL NLRLPPNRIR 60 DVELYQYNPQ QLIEKYESYG EEEWYFFTPR DKKYRNGLRP NRAAGDGYWK ATGADKILKS 120 ESHEIGYRKA LVFYKGKPPK GEKTDWMMHE FRLKDPPAKL SQDEMRLDDW ILCKIYKKSD 180 KSSKNSALIS DNSQGIVSFE YGSDEFGEMD DNLYCEYLMF DHNPSLLLDD NFCDYYDPSL 240 MPMAMVEQGR MDSPDKKTTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-53 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-53 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-53 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-53 | 17 | 184 | 7 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 17 | 184 | 10 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-53 | 17 | 184 | 7 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-53 | 17 | 184 | 7 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847251 | 0.0 | KC847251.1 Gossypium hirsutum NAC domain protein NAC74 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610605.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | K4BWV2 | 3e-57 | NAP1_SOLLC; NAC domain-containing protein 1 | ||||
TrEMBL | A0A2P5X5K9 | 0.0 | A0A2P5X5K9_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.006G005100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24908 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-56 | NAC-like, activated by AP3/PI |
Publications ? help Back to Top | |||
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