PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29077_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 163aa    MW: 19008.1 Da    PI: 9.3254
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29077_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.31.2e-1155108457
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                                  +++rrk++NRe+A+rsR RKk  +e+L+  v  +  eN++Lk++l    +++ 
  Cotton_A_29077_BGI-A2_v1.0  55 ERKQRRKISNRESAKRSRWRKKRHLENLTSQVNRMNIENRRLKNRLHLVINQCH 108
                                 589*****************************************9998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.0E-1052107No hitNo description
SMARTSM003386.4E-1352116IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.49654100IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.48E-1056110No hitNo description
PfamPF001701.1E-856107IPR004827Basic-leucine zipper domain
CDDcd147021.03E-1557108No hitNo description
PROSITE patternPS0003605974IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MFSAEEAVGS QLPAHESGFT PEELNELLSF FESNEPVNSN SSSENSSRAI YSPDERKQRR  60
KISNRESAKR SRWRKKRHLE NLTSQVNRMN IENRRLKNRL HLVINQCHVV WGENEQLRSE  120
SFALWAKLLD LYWTLATMQC NHDNSRHSLS CFNSNKLSSN SIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15876RRKISNRESAKRSRWRKKR
27396RKKRHLENLTSQVNRMNIENRRLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640078.11e-115PREDICTED: basic leucine zipper 8-like
TrEMBLA0A1U8KHH01e-109A0A1U8KHH0_GOSHI; basic leucine zipper 8-like
STRINGGorai.002G135900.15e-98(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122322432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.14e-19basic leucine-zipper 5