PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28455_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 307aa    MW: 34020.7 Da    PI: 7.136
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28455_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.22.9e-201053245
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                + en   rq t++kR++gi+KKA+ELS+LCd+e+ +++fs+t+k
  Cotton_A_28455_BGI-A2_v1.0 10 KLENPNGRQATYAKRKHGIMKKANELSILCDVEIVLLMFSPTNK 53
                                5789999**********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.521153IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-28160IPR002100Transcription factor, MADS-box
CDDcd002661.84E-25281No hitNo description
SuperFamilySSF554552.62E-25291IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-16323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-181154IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-162338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-163859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRVKLKIKK LENPNGRQAT YAKRKHGIMK KANELSILCD VEIVLLMFSP TNKPSLCIGK  60
RSIEEIIEKF AQLTPQERAK RKLESLEENL GKQQQLLSLE CTSQFQNEMQ VPYRMGLEHQ  120
LQTLSWLPNQ DSRHIALSDD PNLIPHRDVE CSASSSFGSY SGYFGTGKSS EPSSSGQENS  180
ILNDLSGNGS LQLQLGGQCP LFSYNLNILN DPKFPPVAEM NFNETPADYQ VNGALQGPRT  240
GFDTAPGSWA STSGSCAVTM FDEPLYTRVS LSPLLPLCFQ HLAMLHGLPY YFMHAAPTAL  300
SNPKVYS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2364481e-94HM236448.1 Gossypium hirsutum MADS32 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017641039.11e-153PREDICTED: agamous-like MADS-box protein AGL30 isoform X2
SwissprotQ1PFA47e-39AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBLA0A0B0MFT90.0A0A0B0MFT9_GOSAR; Floral homeotic APETALA 3-like protein
STRINGPOPTR_0010s17450.11e-116(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87542539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69540.12e-42AGAMOUS-like 94
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]