PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28180_BGI-A2_v1.0 | ||||||||
Common Name | F383_11895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 335aa MW: 36120 Da PI: 10.0112 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.5 | 2e-31 | 258 | 315 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+++dp+++++tYegeH+h Cotton_A_28180_BGI-A2_v1.0 258 ADEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERATDDPSMLIVTYEGEHRH 315 69************************9888***************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.9E-18 | 212 | 255 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.6E-32 | 246 | 316 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.549 | 252 | 318 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-26 | 255 | 316 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.1E-37 | 257 | 317 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-27 | 259 | 315 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MAVDLMSFPK MDDQMAIQEA ATQGMKSMEH LISLLSHQSN RLDCAEVADL TVSKFKKVIS 60 LINRTGHARF RRAPIQSSSS FSSPSSSAAS LTVTDSHKAL TRTPAPVEAP PLTVNPAPVE 120 APSTAPVSFV PSQPQSVTLD FTKPCLFSSN TKSTELEFTK ESFSVSSNSS FMSSAITGDG 180 SVSNGKQGSS LFLTPAAAVS AGKPPLSSAP FKKRCREHEH SENVSGNGKC HCSKRRKNRV 240 KKVIRVPAIS SKIADIPADE YSWRKYGQKP IKGSPYPRGY YKCSTVRGCP ARKHVERATD 300 DPSMLIVTYE GEHRHGEGAA QENMAPGVGL VFKST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 245 | 327 | 2 | 76 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269|PubMed:26433201}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00464 | DAP | Transfer from AT4G31550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:26433201}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN604989 | 0.0 | JN604989.1 Gossypium hirsutum WRKY11-2 mRNA, complete cds. | |||
GenBank | KF669853 | 0.0 | KF669853.1 Gossypium hirsutum WRKY transcription factor 12 (WRKY12) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610951.1 | 0.0 | PREDICTED: probable WRKY transcription factor 17 | ||||
Swissprot | Q9SV15 | 1e-141 | WRK11_ARATH; Probable WRKY transcription factor 11 | ||||
TrEMBL | A0A0B0NIX8 | 0.0 | A0A0B0NIX8_GOSAR; Putative WRKY transcription factor 17-like protein | ||||
STRING | Gorai.001G002200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2508 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24570.1 | 1e-123 | WRKY DNA-binding protein 17 |