PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_28017_BGI-A2_v1.0
Common NameF383_00744
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 259aa    MW: 29260.4 Da    PI: 8.998
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_28017_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.95.8e-1622971599
                                -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                          B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                                 l++p +f++++ +g+ ++  +  +  + gr+W+vk+  r ++    +++GW++F+++++L +gDf+vF++ g++ f   v vf+
  Cotton_A_28017_BGI-A2_v1.0 22 HLSIPLSFFKDYlKGQINC--ESAVLRSYGRTWSVKI--RDRR----FEDGWQDFARDHDLHVGDFLVFRYGGNMVF--DVVVFD 96
                                599*********9555444..5667778*********..7777....9***********************999999..777776 PP

                                S CS
                          B3 99 k 99
                                +
  Cotton_A_28017_BGI-A2_v1.0 97 T 97
                                5 PP
2B3543e-17141229697
                                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                 ++  ++ks rl +p+kfa++++++  +s + +l de+grsW   ++ + ++g++++++GW++ +  n L  +D v ++l+g +
  Cotton_A_28017_BGI-A2_v1.0 141 LTLESMKSFRLNIPRKFARSNDLD--RSCETVLVDEQGRSWMASIRLKDSDGQVYIGRGWRNICIGNSLGLKDCVKLELIG-N 220
                                 4778999***************99..5668*************************************************99.5 PP

                                 EE..EEEEE CS
                          B3  89 efelvvkvf 97 
                                 + ++ +k++
  Cotton_A_28017_BGI-A2_v1.0 221 GITPIFKLY 229
                                 666777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-216100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.06E-208105IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-201196No hitNo description
SMARTSM010195.2E-181398IPR003340B3 DNA binding domain
PfamPF023629.4E-132294IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2522398IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18132226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-18134229IPR015300DNA-binding pseudobarrel domain
CDDcd100172.33E-17135230No hitNo description
PROSITE profilePS5086311.575136232IPR003340B3 DNA binding domain
SMARTSM010195.7E-17137232IPR003340B3 DNA binding domain
PfamPF023622.4E-15141229IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSIALFSPTI PHFFQPLLPG FHLSIPLSFF KDYLKGQINC ESAVLRSYGR TWSVKIRDRR  60
FEDGWQDFAR DHDLHVGDFL VFRYGGNMVF DVVVFDTSAC QRQYPLLATQ TQQTAKEIGK  120
QHEKRTSTSV TLESPHFVSN LTLESMKSFR LNIPRKFARS NDLDRSCETV LVDEQGRSWM  180
ASIRLKDSDG QVYIGRGWRN ICIGNSLGLK DCVKLELIGN GITPIFKLYK VASNSDAKKL  240
PNYFGSNAGC SGGSTIILE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613601.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1U8MRS60.0A0A1U8MRS6_GOSHI; B3 domain-containing protein REM5-like
TrEMBLA0A2P5XIR80.0A0A2P5XIR8_GOSBA; Uncharacterized protein
STRINGGorai.001G040300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.18e-49B3 family protein