PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_27978_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GeBP | ||||||||
Protein Properties | Length: 390aa MW: 42797.9 Da PI: 5.0314 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 131 | 4.5e-41 | 168 | 264 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrl+se+Dei+lL+G++d+ ak+g++p +d++afy+fvkksi+ +v+k q+++KirrLKkKf+++ k k+g++ +fsk+h Cotton_A_27978_BGI-A2_v1.0 168 LFQRLFSEDDEIALLKGMLDYSAKKGADPCADMNAFYNFVKKSIHTDVTKAQMMDKIRRLKKKFENNAGKGKKGEDRTFSKAH 250 79********************************************************************************* PP DUF573 85 dqkifelskkiWgs 98 +q++felsk+iWg+ Cotton_A_27978_BGI-A2_v1.0 251 EQNAFELSKMIWGK 264 ************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.1E-34 | 169 | 263 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016592 | Cellular Component | mediator complex |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MAPKRSNPIE VPPAASSSEE DEEVTSSEEE EEGSSTEEED EEDPKTESTP LIQKSPPPRK 60 PETATPGVVN DESDESGSDS ESESDTATPN VKPLATKPME ESLNAKKPRS NKPLTSPIRA 120 SSSKRPGELD LDAKEAKRPK KKVGEEGLAT TPAAEEVKKT GEDAKKQLFQ RLFSEDDEIA 180 LLKGMLDYSA KKGADPCADM NAFYNFVKKS IHTDVTKAQM MDKIRRLKKK FENNAGKGKK 240 GEDRTFSKAH EQNAFELSKM IWGKEGISGK VESSAAKSNG KAKGNNKAVV ALKAEFSSPD 300 KKTYDAVPIE ADKVVSKSSG SLFDKRFGVS DMEEAVVKLG LDMVDGEKKA ALEAKWRKLQ 360 IAQLELFVER SELVTEQAKL VLEYYKSEDK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ751265 | 0.0 | JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642340.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
Refseq | XP_017642364.1 | 0.0 | PREDICTED: mediator-associated protein 1-like | ||||
TrEMBL | A0A0D2Q0C7 | 0.0 | A0A0D2Q0C7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.002G037800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25210.1 | 6e-40 | DNA-binding storekeeper protein-related transcriptional regulator |