PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27654_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ZF-HD
Protein Properties Length: 293aa    MW: 32213.8 Da    PI: 8.1232
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27654_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.73.4e-3444100358
                 ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                                  v YkeClkNhAaslGgha+DGCgEfmps++++ +++ +lkCaACgCHRnFHRr++ 
  Cotton_A_27654_BGI-A2_v1.0  44 VVSYKECLKNHAASLGGHALDGCGEFMPSPTSTpTDPVSLKCAACGCHRNFHRRDPY 100
                                 689*****************************99********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-1845105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-284598IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.5944798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-314798IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-28184253IPR009057Homeodomain-like
SuperFamilySSF466898.12E-18184253IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-26192249IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEVANTKTTP YPQSESSSET HNPNEATTKS LTLLKSCTIH HHMVVSYKEC LKNHAASLGG  60
HALDGCGEFM PSPTSTPTDP VSLKCAACGC HRNFHRRDPY DAPPAFIHRL PPPPTHHSSS  120
PSPTHTPGLS PSPSPSPSPT HTPPSPVPYS YYSSAPHMLL ALSTGYSGPL DEYHHHPRVG  180
VIEKNNNNPS GRKRSRTKFS KEQKQKMHDF AERVGWRMPK GEEKLVKEFC DEVGVDRGVL  240
KVWMHNNKNT FGKKLEVLAV GNLNLDSNNN NSEDNPNGNA TISFDSNSDT PQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-201932501875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617135.10.0PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ12e-74ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A2P5SB711e-179A0A2P5SB71_GOSBA; Uncharacterized protein
STRINGGorai.013G085500.11e-179(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-52zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]