PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_27146_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26738.3 Da    PI: 5.8475
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_27146_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.23.8e-222770245
                                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                + enks rqvtfskRr+g++KKA EL++LC+ ++ +i+fs++gk
  Cotton_A_27146_BGI-A2_v1.0 27 KLENKSSRQVTFSKRRTGLFKKAIELCILCGCNIGIIVFSPKGK 70
                                679****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.5671878IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-321877IPR002100Transcription factor, MADS-box
CDDcd002652.84E-371995No hitNo description
SuperFamilySSF554555.89E-281993IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-202040IPR002100Transcription factor, MADS-box
PfamPF003191.4E-232874IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-204055IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-205576IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MASLNQTRSS NTTTKATRGR RKIPIKKLEN KSSRQVTFSK RRTGLFKKAI ELCILCGCNI  60
GIIVFSPKGK PFCFGHPDID TILERYLSKN PNHDDGLMMS GDDIAPCLEE FNKEIRETLE  120
KLEEEKKRSK EIQKEKEERK TKGLFWWDDP IDNNMGIEEL EAYAKALEEL RNNVANRASA  180
LMEDVFAMST AMTVANPDGM GNSFAIQNSA FAVGDTGGYV DFNLGVEGFN FGDGHDSPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-1719108187Myocyte-specific enhancer factor 2A
3kov_B3e-1719108187Myocyte-specific enhancer factor 2A
3kov_I3e-1719108187Myocyte-specific enhancer factor 2A
3kov_J3e-1719108187Myocyte-specific enhancer factor 2A
3p57_A3e-1719108187Myocyte-specific enhancer factor 2A
3p57_B3e-1719108187Myocyte-specific enhancer factor 2A
3p57_C3e-1719108187Myocyte-specific enhancer factor 2A
3p57_D3e-1719108187Myocyte-specific enhancer factor 2A
3p57_I3e-1719108187Myocyte-specific enhancer factor 2A
3p57_J3e-1719108187Myocyte-specific enhancer factor 2A
5f28_A3e-1719108288MEF2C
5f28_B3e-1719108288MEF2C
5f28_C3e-1719108288MEF2C
5f28_D3e-1719108288MEF2C
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636077.11e-179PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A1U8N4181e-153A0A1U8N418_GOSHI; agamous-like MADS-box protein AGL61
STRINGGorai.N026300.11e-146(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15814714
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-23AGAMOUS-like 61