PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26995_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 20641.2 Da PI: 7.4383 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.5 | 2.9e-12 | 75 | 117 | 3 | 48 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 y+GVr++ +g ++AeIrd + ng +r++lg++ t+++Aa a+++ Cotton_A_26995_BGI-A2_v1.0 75 YRGVRRRL-SGTYAAEIRDLKRNG--ARIWLGTYETPDGAALAYVE 117 9****888.8*********54454..******************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.737 | 74 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.8E-10 | 74 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.26E-15 | 74 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-16 | 74 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-11 | 75 | 117 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.1E-6 | 75 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-7 | 75 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-6 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MILIQFQDRE NPRKNELHDD AINVDQWINF DQLFDATEET DAVNNASFPS FEVSFQMETT 60 AAVPKPHAPP KKFNYRGVRR RLSGTYAAEI RDLKRNGARI WLGTYETPDG AALAYVEPVR 120 VSSKKRRSPE PLASCSWSQS PSSAWDKGTP KLKRRSEIKT EFEVDMYHLV PTEFCQTLIC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012473780.1 | 1e-100 | PREDICTED: ethylene-responsive transcription factor 2-like | ||||
TrEMBL | A0A2P5Y2C1 | 1e-105 | A0A2P5Y2C1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.004G070600.1 | 1e-100 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 2e-17 | ethylene-responsive element binding factor 13 |