PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_26940_BGI-A2_v1.0 | ||||||||
Common Name | F383_24858 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | G2-like | ||||||||
Protein Properties | Length: 307aa MW: 34620.5 Da PI: 8.4809 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.6e-32 | 20 | 73 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+ Cotton_A_26940_BGI-A2_v1.0 20 PRLRWTPQLHHCFLHAIDRLGGQHKATPKLVLQLMDVKGLTISHVKSHLQMYRS 73 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 16 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.751 | 16 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-15 | 18 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.9E-23 | 20 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MGRCGRHNGA VRQYIRSKVP RLRWTPQLHH CFLHAIDRLG GQHKATPKLV LQLMDVKGLT 60 ISHVKSHLQM YRSMRSDYGR QVTSSTHERR QSFDDNHGFD GCVVPIEESC SHLIDNNPFP 120 PKRHGICETR VSNTCSFDDY KQTMDARKRI KQDNGDYVWD QTINYSHSLG QPLALSLPHD 180 LYSLNAFRSY SLLSLTQATK VEVEDPKRAH EQDAKLIERN IRRQEEDDGG GGGCELSLSL 240 SLSLQYHNTS STSETRSSEA FSSYLRSNYK DCWGSSSTST FSSSSSSSSV TRRSAINLDL 300 SIALCGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-18 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605173.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
Refseq | XP_017605174.1 | 0.0 | PREDICTED: putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0B0MKR6 | 0.0 | A0A0B0MKR6_GOSAR; Uncharacterized protein | ||||
STRING | Gorai.009G329400.1 | 1e-180 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM363 | 28 | 184 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 3e-36 | G2-like family protein |