PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24895_BGI-A2_v1.0
Common NameF383_33881
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 363aa    MW: 41645.1 Da    PI: 7.8446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24895_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.25.9e-2555124271
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                 W ++e++ Li +r+em+ r++++k++k+lWe++s+ mr++gf rsp++C++kw+nl k++kk k+++++ 
  Cotton_A_24895_BGI-A2_v1.0  55 WVQDETRSLIGFRKEMDGRFNTSKSNKHLWEKISAMMRKKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS 124
                                 *****************************************************************99974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-445116IPR009057Homeodomain-like
PROSITE profilePS500908.26947111IPR017877Myb-like domain
SMARTSM007172.6E-451113IPR001005SANT/Myb domain
CDDcd122035.18E-2853118No hitNo description
PfamPF138379.5E-1954136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MARDMIIEVT TNGGLPDHLR HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET  60
RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHQ  120
DRGSGSVKIT YKEIEEILRE RTKKPYKAPT PPPKLDSFMH FSDKGFEDTS ITFGPLEASG  180
RPALNLEQGL DHDGHPLAIT TANAVAVSGV PPWNWRETPG NGGDRLPYGG RVITVKYRDY  240
AQRIGIDGTA EAIREAIKSA FRLRTKRAFW LEDEDHIIRS LDREMPLGNY TLHLDEGLAV  300
KVCLYDVSDH IPVHTEEKIF YTEDDYREYL VFRGYVGLKE IDGYRNINSM DDLQTNTIYR  360
GVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A3e-4449131183DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00666PBMTransfer from GSVIVG01007522001Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU8964137e-35KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616896.10.0PREDICTED: trihelix transcription factor GT-1-like isoform X2
SwissprotQ9FX531e-180TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0B0N3620.0A0A0B0N362_GOSAR; Trihelix transcription factor GT-1-like protein
STRINGGorai.002G190600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-174Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]