PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_24895_BGI-A2_v1.0 | ||||||||
Common Name | F383_33881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 363aa MW: 41645.1 Da PI: 7.8446 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 79.2 | 5.9e-25 | 55 | 124 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 W ++e++ Li +r+em+ r++++k++k+lWe++s+ mr++gf rsp++C++kw+nl k++kk k+++++ Cotton_A_24895_BGI-A2_v1.0 55 WVQDETRSLIGFRKEMDGRFNTSKSNKHLWEKISAMMRKKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS 124 *****************************************************************99974 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 45 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.269 | 47 | 111 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-4 | 51 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 5.18E-28 | 53 | 118 | No hit | No description |
Pfam | PF13837 | 9.5E-19 | 54 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
MARDMIIEVT TNGGLPDHLR HHHPHSLQQQ QQMILGESSG DDPEVKAPKK RAETWVQDET 60 RSLIGFRKEM DGRFNTSKSN KHLWEKISAM MRKKGFDRSP TMCTDKWRNL LKEFKKAKHQ 120 DRGSGSVKIT YKEIEEILRE RTKKPYKAPT PPPKLDSFMH FSDKGFEDTS ITFGPLEASG 180 RPALNLEQGL DHDGHPLAIT TANAVAVSGV PPWNWRETPG NGGDRLPYGG RVITVKYRDY 240 AQRIGIDGTA EAIREAIKSA FRLRTKRAFW LEDEDHIIRS LDREMPLGNY TLHLDEGLAV 300 KVCLYDVSDH IPVHTEEKIF YTEDDYREYL VFRGYVGLKE IDGYRNINSM DDLQTNTIYR 360 GVS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 3e-44 | 49 | 131 | 1 | 83 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00666 | PBM | Transfer from GSVIVG01007522001 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU896413 | 7e-35 | KU896413.1 Hibiscus cannabinus microsatellite HC_ES_37_CTC sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017616896.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like isoform X2 | ||||
Swissprot | Q9FX53 | 1e-180 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0B0N362 | 0.0 | A0A0B0N362_GOSAR; Trihelix transcription factor GT-1-like protein | ||||
STRING | Gorai.002G190600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13450.1 | 1e-174 | Trihelix family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|