PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_24793_BGI-A2_v1.0
Common NameF383_06040
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 288aa    MW: 32961.8 Da    PI: 6.2449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_24793_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.42.9e-49181433128
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                 pGfrFhPtdeelv +yL++kv++k+l++ e ike+diyk++P+dLpk+   +e+e+yfF++r +ky+++ r+nr+t+sg+Wka
  Cotton_A_24793_BGI-A2_v1.0  18 PGFRFHPTDEELVRFYLRRKVDNKPLTI-ELIKEIDIYKYDPSDLPKTGMMGENELYFFCRRGRKYRNSVRPNRVTESGFWKA 99 
                                 9*************************99.89***************76667899***************************** PP

                         NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 tg dk+v+s  +ge++glkktLv+y+g+  kg+ktdW+mhe+rl
  Cotton_A_24793_BGI-A2_v1.0 100 TGIDKPVFSVeGGEAIGLKKTLVYYRGSGGKGTKTDWMMHEFRL 143
                                 ********9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5511163IPR003441NAC domain
PROSITE profilePS5100552.13116164IPR003441NAC domain
PfamPF023652.1E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSMVHGTTST VDEDVPLPGF RFHPTDEELV RFYLRRKVDN KPLTIELIKE IDIYKYDPSD  60
LPKTGMMGEN ELYFFCRRGR KYRNSVRPNR VTESGFWKAT GIDKPVFSVE GGEAIGLKKT  120
LVYYRGSGGK GTKTDWMMHE FRLPNPTMTA QDAEVWTICR FFKRHRKIKQ DWRQGAAKPA  180
STGNGNGVQG YESGSVGSSS HENYITLGSQ NVENYDDDDG EMVMDHMMND GSCRREWYHG  240
EMQCMASSSS PSSSFSTEND FFTNANWDEL KSIVDLDLDP FHFAKNHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-4761651166NO APICAL MERISTEM PROTEIN
1ut4_B8e-4761651166NO APICAL MERISTEM PROTEIN
1ut7_A8e-4761651166NO APICAL MERISTEM PROTEIN
1ut7_B8e-4761651166NO APICAL MERISTEM PROTEIN
4dul_A8e-4761651166NAC domain-containing protein 19
4dul_B8e-4761651166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1106450.0KC110645.1 Gossypium hirsutum NAC protein 10 (NAC10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632343.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like
SwissprotQ9SK559e-77NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8JTK20.0A0A1U8JTK2_GOSHI; transcription factor JUNGBRUNNEN 1-like
STRINGGorai.004G270300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2481134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.18e-79NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]