PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24772_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 294aa MW: 33294.1 Da PI: 5.8032

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24772_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.7	2.2e-39	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 aCaaCk++rrkC ++C lapyfpa+q+k f+n+hklFG+sn++k+l++l+++++ +am+s+ y+A++r r PvyG++gvi++l Cotton_A_24772_BGI-A2_v1.0 10 ACAACKYQRRKCIPECLLAPYFPADQTKVFQNAHKLFGVSNIVKILRSLDPSQHAEAMRSIKYQANVRDRFPVYGCLGVIRQL 92 7******************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q++ l++e++++ + Cotton_A_24772_BGI-A2_v1.0 93 YYQIQMLEEEMHTVLT 108 ********998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.274	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-37	10	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MTLKGGATSA CAACKYQRRK CIPECLLAPY FPADQTKVFQ NAHKLFGVSN IVKILRSLDP 60 SQHAEAMRSI KYQANVRDRF PVYGCLGVIR QLYYQIQMLE EEMHTVLTQL EMYRQHHHHQ 120 QQQHQHQHQI SSMADDVISQ LELGMAPSNN ALPLFNQVTH QPYTMQNTYS SSDIDSPPKD 180 NVENNSLWIQ HLFLDTNNHG TSNNDSPIAI QSQLLVPNSE PLADTQHQVV QDYDEIHPFF 240 DSIDDRQSYI DTKDAEDSSS SEESLKETTQ LMVGNVGSKD LKNAAACFSL TSVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-31	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-31	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393392	1e-57	GQ393392.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0357 SSR marker CGR5281 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667688.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Refseq	XP_017641435.1	0.0	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	6e-59	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1U8HUQ7	0.0	A0A1U8HUQ7_GOSHI; LOB domain-containing protein 27-like
STRING	Gorai.003G070700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6303	27	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-60	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]