PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_24713_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 246aa MW: 27085 Da PI: 8.66

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_24713_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	71	123	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +h + r+RR++i + ++ Lr llP+ +K s ++ + Av YIk+Lq Cotton_A_24713_BGI-A2_v1.0 71 KKSMHRGIGRQRRQEIATLYASLRNLLPPkY---IRGKCSISDEVDGAVSYIKYLQ 123 678999999******************77...*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.4E-8	68	138	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.78E-8	68	126	No hit	No description
SuperFamily	SSF47459	4.45E-11	69	139	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.985	70	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-7	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MENVTCTQES IHYATSSSLH IFCNPSSHPN SPKLVHILPK CCPAVVSGSR GRQQKLLASG 60 KRENSNDDDK KKSMHRGIGR QRRQEIATLY ASLRNLLPPK YIRGKCSISD EVDGAVSYIK 120 YLQKRIDGLS GKRDELKKVW GNSSGFHQGM SMSCIEAFPS SAVVRQSLDG VEIVISDSVG 180 AQALTLSKVL QQLLEEGLDV VNCVSSRTDG ALIYTINYEV SDMRGVDPPF LLEKLVSPVS 240 PKMIFE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016676856.1	1e-142	PREDICTED: uncharacterized protein LOC107896255 isoform X1
Refseq	XP_017647514.1	1e-141	PREDICTED: disease resistance protein At4g27190-like
TrEMBL	A0A1U8IFD0	1e-141	A0A1U8IFD0_GOSHI; uncharacterized protein LOC107896255 isoform X1
STRING	Gorai.011G226600.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2968	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	1e-38	bHLH family protein