PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_24653_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 247aa MW: 28461.9 Da PI: 6.7833 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.7 | 5.6e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl Cotton_A_24653_BGI-A2_v1.0 8 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8.1e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l +++++++G++ W++I+r+++ gRt++++k++w++++ Cotton_A_24653_BGI-A2_v1.0 61 RGKMTPHEERLVLELHAKWGNR-WSRISRKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.557 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.73E-30 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-16 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-17 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-21 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.13E-11 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.24 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 61 | 105 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-23 | 63 | 108 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.93E-11 | 63 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MVQDEIRKGP WTEQEDILLV NFVHLFGDRR WDFIAKVSGL NRTGKSCRLR WVNYLHPGLK 60 RGKMTPHEER LVLELHAKWG NRWSRISRKL PGRTDNEIKN YWRTHMRKTA QEKKRAIPIS 120 PSSSSSNCHS SSSTVTAVDS LPSSGTGNIV SFYDTGGLDM AGKKNSPEFE DGNGYSMDDI 180 WKDIDMSEEN TVIKPLSDNY SQQGCNFSWE YCWDTLWKMD DEEESKMFFP PNQLVSCFDF 240 GRESVTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 5 | 108 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 1 | 110 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017641453.1 | 0.0 | PREDICTED: transcription factor MYB59-like isoform X1 | ||||
Swissprot | Q9LX82 | 6e-94 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A1U8MZG1 | 0.0 | A0A1U8MZG1_GOSHI; transcription factor MYB59-like | ||||
STRING | Gorai.001G107900.1 | 1e-168 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2502 | 27 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-94 | myb domain protein 59 |
Publications ? help Back to Top | |||
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