PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23718_BGI-A2_v1.0
Common NameF383_10816
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 539aa    MW: 61443 Da    PI: 9.7148
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23718_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.2e-171166257
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                                +kR   t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+
  Cotton_A_23718_BGI-A2_v1.0 11 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 66
                                89****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.726767IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-16867IPR009057Homeodomain-like
SMARTSM003891.0E-14971IPR001356Homeobox domain
SuperFamilySSF466893.38E-15967IPR009057Homeodomain-like
PfamPF000461.6E-141166IPR001356Homeobox domain
CDDcd000862.57E-151167No hitNo description
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
EEDKVSLDVN KKRAVKTPAQ VIVLENFYKE ERFPSDEMKA KLAVQLGLTQ KQISSWFCHR  60
RLKDKRRDDC YANGQHDYSS GVIQDHVSGL RQDSCGSIKQ GDYRYIDLRE VESRIIHGQG  120
FPAADLTYER RSHQYPYGVQ MEDPSSESSL SLHDQLFLKV GNRYDMHISA KPTQNGAIVQ  180
TNSSSKSIGY KPSGYLKVKG QSENPVITAV KRQMGRHYRE DGPVLGIQFD PLPPGAFEFP  240
SSHPVNEPIN IRDSRQPHCL DISGVMKQSK PKIINEVHNT MLSFQDSYME GANFNTVHGS  300
KSQDWRCHHQ PKYKPSFSCS NPFTYKDFPL DIYKGYADKP AISDCKRSWM SSKLVVERMV  360
PDSCSNHPGP YGRKITNEQK IPGLHDAHHI HMDPKAKNLP KTSSFIRACS ESLGNERGPF  420
ARMEKVENVV GEWKLRKDYP VRVKIDATNE LSVAKRVDLE FPQKDFVANA SHARLHLLTN  480
PNLPWMYRVA SVGMKLQKLV YPLGLRMHMV EKIAFVLLEK ERRSSSLLTR KAVVGRTWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15967RRLKDKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644329.10.0PREDICTED: uncharacterized protein LOC108484940 isoform X1
TrEMBLA0A0B0NB290.0A0A0B0NB29_GOSAR; Homeobox 10
STRINGGorai.001G134800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2478234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.11e-68HB-other family protein