PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23396_BGI-A2_v1.0
Common NameF383_09300
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 337aa    MW: 36840.2 Da    PI: 6.7839
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23396_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17252285134
                        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                 C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Cotton_A_23396_BGI-A2_v1.0 252 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 285
                                 99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.4E-762333IPR016679Transcription factor, GATA, plant
SMARTSM004015.1E-17246296IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.279246282IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.6E-15250283IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.56E-15250309No hitNo description
CDDcd002024.56E-14251308No hitNo description
PfamPF003202.3E-15252285IPR000679Zinc finger, GATA-type
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIGPTNFIDE IDCGSFFDHI DDLLDFPNED VEAGFSAADS AINAAAFPSI WTAHSESFPG  60
SDSVFSNNSA SDLSAELSVP YEDIVQLEWL SNFVEDSNCG ASLTIKKQEP NSNNKDSPSH  120
HDHDHHQFQT SSPVSVLESS SSYSGEKPVA APGKCGRARS KRPRPATFNP RSAIQLISPS  180
SSVNDNDVPQ SLFVPKVPSD SENHAESRLL IKLPRQVNPE HKKKKKIKLT LPAPPPPPTD  240
NNTTPNPSVR KCMHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFIP  300
SVHSNSHKKV LEMRTKCGTA DVPEMIPNKS NPALDYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160164KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649775.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A0B0P6A10.0A0A0B0P6A1_GOSAR; GATA transcription factor
STRINGGorai.011G238800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-40GATA family protein