PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_23199_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 376aa    MW: 42504.9 Da    PI: 4.8308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_23199_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29147206258
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                 dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++eitY+g+H++
  Cotton_A_23199_BGI-A2_v1.0 147 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhtqDCWATKQVQRSDEDPTIFEITYRGTHTC 206
                                 8**************************998899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.631141204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-28141206IPR003657WRKY domain
SuperFamilySSF1182902.22E-25145206IPR003657WRKY domain
SMARTSM007741.1E-39146208IPR003657WRKY domain
PfamPF031061.5E-26147206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEHRWNREQG TLISELIQGM ELAKQLRVHL DTASSTESMD LLVQKILSSY EKALLILQFS  60
RTMSMGQPQQ NVGATSGVPE SPLSINGSPR SDDLDKDNQD TRDVSKKREF YANDSFFSGS  120
GFCRKMFPRW TDHVRVTSES LLEGTHDDGY SWRKYGQKDI LGAKYPRSYY RCTYRHTQDC  180
WATKQVQRSD EDPTIFEITY RGTHTCVNGN QPVPPPASPE KQEYKLTNLN TNNNQQLQSQ  240
DILSNLRKGL RVNTEGLDNK EMATSFSFPS TSFGWLKTEN NSFSPSAVLD NNNILNSFSS  300
PFTSPATPEL NYFSASQPQM NSFGGMLSTQ NSEPDLKELI SANTSATNSE IIDLDFSLDQ  360
VELDPNFQFD TQGFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19147206968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258750.0KJ825875.1 Gossypium hirsutum WRKY protein 33 (WRKY33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605317.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A0U1Z9M80.0A0A0U1Z9M8_GOSHI; WRKY protein 33
STRINGGorai.008G253300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.16e-69WRKY family protein