PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_22746_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 493aa MW: 56253.5 Da PI: 5.458 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 332.5 | 8.1e-102 | 116 | 492 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 Lle A+a+s+g+ l+q+l++ l+el+sp+gd+ q+l++yf++AL +r++++++++y++l + ++++ + +++ +++ f+e Cotton_A_22746_BGI-A2_v1.0 116 ILLETATAISEGNGGLVQQLMWMLNELNSPYGDTEQKLVSYFLQALFSRITDTGERCYRTLDTVSDKTCSFESTRKMVLKFQE 198 699**********************************************************9998886665555555566*** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetge 163 vsP+ +f+h+++N a++ea+ege+++HiiD++ ++++QWp+Ll+aLa+R++++p lR+T+++++++g k+ ++e+++ Cotton_A_22746_BGI-A2_v1.0 199 VSPWTTFGHVACNGAVMEAFEGERKLHIIDISNTYCTQWPTLLEALATRTDETPYLRLTTIVPSKKGgvsgvsVKKVMKEIEN 281 ***************************************************************99889*9999999******* PP GRAS 164 rLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245 r+ kfA+ +gvpf+f+v+++ +l dl+l+eL+++++Eala+n+v lh++ +++++rd +++ +++l+P++++v+e+e Cotton_A_22746_BGI-A2_v1.0 282 RMVKFARLMGVPFKFKVIHHPgDLCDLDLSELDINEDEALAINFVGTLHSIT----AVDNRRDLMISNFRRLQPRIITVIEEE 360 *****************97777*****************************8....888899********************* PP GRAS 246 adhnse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324 ad++ + +F+++f e+l+++ + f++l+ + r+s+ r ++E++ gr+iv++vac+ ++++e +e + +W+ r++++GF Cotton_A_22746_BGI-A2_v1.0 361 ADLDVGvdglEFVKGFHECLRWFRVYFEALDDCFERTSNVRLMLEQA-AGRAIVDLVACSPSMSIEMREPATRWSWRFKASGF 442 8885444555*************************************.*********************************** PP GRAS 325 kpvplsekaakqaklllrkvksdg.yrveeesgslvlgWkdrpLvsvSaWr 374 +pv ls+++ +++++llr++k +g + ++ ++ ++l Wkd+p+v++SaWr Cotton_A_22746_BGI-A2_v1.0 443 NPVVLSDEVCDDVRALLRRYK-EGwSMAQCPDAGIFLSWKDQPVVWASAWR 492 *********************.66255568899999**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 46.527 | 87 | 472 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-99 | 116 | 492 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MDTLFRLVSL QSSDQSFNSS RTSSSSRSSK QNYHIHYQQE DQECFNCFMD EDDYSSSSSQ 60 HFYPYHHHQP HLSPTTKNTS TATAHHVFQT SGSDFSTFSL AWELNFDFSC KWATGILLET 120 ATAISEGNGG LVQQLMWMLN ELNSPYGDTE QKLVSYFLQA LFSRITDTGE RCYRTLDTVS 180 DKTCSFESTR KMVLKFQEVS PWTTFGHVAC NGAVMEAFEG ERKLHIIDIS NTYCTQWPTL 240 LEALATRTDE TPYLRLTTIV PSKKGGVSGV SVKKVMKEIE NRMVKFARLM GVPFKFKVIH 300 HPGDLCDLDL SELDINEDEA LAINFVGTLH SITAVDNRRD LMISNFRRLQ PRIITVIEEE 360 ADLDVGVDGL EFVKGFHECL RWFRVYFEAL DDCFERTSNV RLMLEQAAGR AIVDLVACSP 420 SMSIEMREPA TRWSWRFKAS GFNPVVLSDE VCDDVRALLR RYKEGWSMAQ CPDAGIFLSW 480 KDQPVVWASA WRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 81 | 493 | 4 | 420 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 81 | 493 | 4 | 420 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017629678.1 | 0.0 | PREDICTED: protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A1U8IQU4 | 0.0 | A0A1U8IQU4_GOSHI; protein SHORT-ROOT-like | ||||
STRING | Gorai.007G223500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6104 | 25 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 0.0 | GRAS family protein |