PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22459_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 136aa    MW: 15198.7 Da    PI: 9.3822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22459_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201668156
                         AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                                ++y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  Cotton_A_22459_BGI-A2_v1.0 16 TRYRGVRRRP-WGKFAAEIRDS---NrHGARVWLGTFNTAEEAARAYDRAAYSMRGH 68
                                68********.**********4...3234**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.56E-161676No hitNo description
PfamPF008472.5E-161668IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-311777IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-231777IPR016177DNA-binding domain
SMARTSM003801.6E-331781IPR001471AP2/ERF domain
PROSITE profilePS5103223.7621775IPR001471AP2/ERF domain
PRINTSPR003679.0E-121829IPR001471AP2/ERF domain
PRINTSPR003679.0E-124157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MEGSSSKGKE ERGETTRYRG VRRRPWGKFA AEIRDSNRHG ARVWLGTFNT AEEAARAYDR  60
AAYSMRGHLA ILNFPHEYLM GSGGATASRG SSSAASSSSS SSSMDQRGKQ VFEIEYLDDK  120
LLEELLENEE KNKEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-411413611130Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6166901e-176JX616690.1 Gossypium hirsutum clone NBRI_GE61537 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017632571.19e-95PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-43ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8N6W32e-90A0A1U8N6W3_GOSHI; ethylene-responsive transcription factor ERF096-like
STRINGGorai.005G049200.19e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.12e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]