PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22387_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 136aa    MW: 15315.1 Da    PI: 5.3332
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22387_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB161.11.6e-50398297
                       NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86
                                 eq+r+lPianv+rimk++lP  ak+sk+ak+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+ lGf++y++++  y
  Cotton_A_22387_BGI-A2_v1.0  3 DEQERLLPIANVGRIMKQILPPSAKVSKEAKQTLQECATEFISFVTGEASDKCRKENRKTVNGDDICWALGALGFDNYADAIVRY 87
                                69*********************************************************************************** PP

                       NF-YB 87 lkkyrelegek 97
                                l+kyre+e++k
  Cotton_A_22387_BGI-A2_v1.0 88 LHKYREVERDK 98
                                *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.2E-492128IPR009072Histone-fold
SuperFamilySSF471132.48E-385124IPR009072Histone-fold
PfamPF008081.5E-25872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.9E-163654No hitNo description
PROSITE patternPS0068503955IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.9E-165573No hitNo description
PRINTSPR006154.9E-167492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MVDEQERLLP IANVGRIMKQ ILPPSAKVSK EAKQTLQECA TEFISFVTGE ASDKCRKENR  60
KTVNGDDICW ALGALGFDNY ADAIVRYLHK YREVERDKAT QNKATCISSQ EKDEESSEEK  120
SNQPPHQQAE APSTRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-39293192Transcription factor HapC (Eurofung)
4g92_B2e-39293192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5671679e-54AJ567167.1 Gossypium hirsutum microsatellite DNA mGhCIR221, clone CIR221.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618953.11e-98PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040273e-56NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1U8I3874e-95A0A1U8I387_GOSHI; nuclear transcription factor Y subunit B-4-like
TrEMBLA0A1U8IBA14e-95A0A1U8IBA1_GOSHI; nuclear transcription factor Y subunit B-4-like
STRINGGorai.013G205200.11e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-56nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]