PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_22052_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 596aa    MW: 67310.6 Da    PI: 5.356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_22052_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS277.53.9e-852125821374
                        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalpps.etsekn.sseelaa 80 
                                 lv+lLl++Ae v  +++e+a++lL+r + +as++++p+qR++ yf+e+L++r+   ++  ++k  ++  +t  +n   ++l +
  Cotton_A_22052_BGI-A2_v1.0 212 LVHLLLTAAEKVGYEQFERASRLLSRCEWIASERASPVQRIVYYFAEGLRERIDTgMGRIIAKEPEMIfKTGIENgLNTNLIS 294
                                 68***************************************************995555555555333033223323333333 PP

                        GRAS  81 lkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleet 161
                                   +  +e  P++++++++  qaIle v++++++HiiD+++  G+QW  L+qaLa+R+ +    l+iT+vg    + +e++ et
  Cotton_A_22052_BGI-A2_v1.0 295 --VrIHEYVPFFQVTQFMGIQAILENVASASKIHIIDLELRSGVQWTGLMQALAEREiRHVEILKITAVGF---VGNEKIAET 372
                                 ..2489***************************************************88888*********...78******* PP

                        GRAS 162 gerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                                 g+rL+++A+++++pf+f +++++++ed++ e L++ ++E+laV + l l ++ + +++le+    +++++k+l+P+vv+v+e 
  Cotton_A_22052_BGI-A2_v1.0 373 GKRLESVAASFKLPFSFIAVYVEDMEDIKEELLKIGNDESLAVFCPLVLRTMISIPTCLEN----LMRVMKNLNPTVVIVIEI 451
                                 ****************************************************988888888....****************** PP

                        GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                 ea+hns+sF++rf+eal +ys++fd+l++ l +e e r+ vE + l + i+n+va+eg+er+ r  +le W++ + ++ ++++
  Cotton_A_22052_BGI-A2_v1.0 452 EANHNSPSFVNRFIEALFFYSTFFDCLDTCLEHEGELRAEVESV-LCNGIRNIVATEGKERVVRSVKLEVWSAFFARFRMTEL 533
                                 *******************************************9.999*********************************** PP

                        GRAS 328 plsekaakqaklllrkvk.sdg.yrveeesgslvlgWkdrpLvsvSaWr 374
                                  +se+   q +l++++++      ++++  +s++ gWk+ p+ svSaW+
  Cotton_A_22052_BGI-A2_v1.0 534 GFSESSLYQGSLVIKQFPsAASyCTLDKCGKSVIVGWKGTPVQSVSAWK 582
                                 ******************6555346777888999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.109186560IPR005202Transcription factor GRAS
PfamPF035141.4E-82212582IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDNGLFPFSS PFDFNGIQGN YNLPDFEKDG TVIKGKHDPL FGFQEIGDDP DNDPVFPNHG  60
LYPNVTKMSE NQEQQQGRAA TKSAFSDEYS FSSVFSGNMV FQEFSRPENM KPIKDSNMQS  120
SCRSSSLELL TNYGNGFKKL RFSKYVGSDG RDGTDERGGS QKKLSAEEIM RVTGARYIQL  180
SDMRYDDFSM IMHPFGHALS GLSDDEKKDV ELVHLLLTAA EKVGYEQFER ASRLLSRCEW  240
IASERASPVQ RIVYYFAEGL RERIDTGMGR IIAKEPEMIF KTGIENGLNT NLISVRIHEY  300
VPFFQVTQFM GIQAILENVA SASKIHIIDL ELRSGVQWTG LMQALAEREI RHVEILKITA  360
VGFVGNEKIA ETGKRLESVA ASFKLPFSFI AVYVEDMEDI KEELLKIGND ESLAVFCPLV  420
LRTMISIPTC LENLMRVMKN LNPTVVIVIE IEANHNSPSF VNRFIEALFF YSTFFDCLDT  480
CLEHEGELRA EVESVLCNGI RNIVATEGKE RVVRSVKLEV WSAFFARFRM TELGFSESSL  540
YQGSLVIKQF PSAASYCTLD KCGKSVIVGW KGTPVQSVSA WKFSRDRGRV FGNYRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-3522058127378Protein SCARECROW
5b3h_A1e-3522058126377Protein SCARECROW
5b3h_D1e-3522058126377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635883.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A2P5YIW10.0A0A2P5YIW1_GOSBA; Uncharacterized protein
STRINGGorai.008G139000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16533913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-52RGA-like 1